Girardinichthys multiradiatus (darkedged splitfin): 124879155
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Entry
124879155 CDS
T08099
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
124879155
NCBI-ProteinID:
XP_047239471
LinkDB
All DBs
Position
13:8630053..8723744
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AA seq
1619 aa
AA seq
DB search
MEFRLGFRITLVWFVLALTLSGERVEAQRAGCKNVHYDLTFILDTSSSVGKENFEKIRQW
VANLVESFDVAPDKTRVAVVRYSDTPTTEFTLDRYRTLEDVKQAARNMRYLGGNTMTGDA
ISYTTNNIFMEQNGARPPARGIQKVAILLTDGRSQDYVLEPSKAAAKAGIRMFAVGIGEA
LKEELEEIAAEPKNAHVFHVTDFNAIDKIRGRLRRRLCENVLCPKMKVQPDRFKPNSTSY
DLEEVPGFDLMEYFNVKDILGTRVDESQSSYVRLGTMPVVQQSEDVFPQGLPDEYAFVTT
FKFRKTSRREDWYLWQIFDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNPEVDN
LFDRNWHKIGLSVEAKSVALYLDCKHIQTLPIEDREDIDIQGKTVIGKRLYDSVPIDFDL
QRMMIYCDSKHAEVETCCDLPTGPCPKKVVTEAPPVRIPTPTPTVAEQKRGPQANCSCPA
GEKGNIGARGLPGLKGEIGPKGAIGPQGIKGERGESGKLTSVKGDRGEKGDRGTIGLTGS
PGQKGEKGSGGVPGIDGLTGDKGDKGEAGRLGAAGLPGPGGQKGIQGDIGIPGAPGPKGV
IGDSGVKGEKGTPGAGGLPGVDGLPGKSGLPGKDGLRGLAGAPGPNGIKGNKGERGPPGL
PGDMVQQQGLWGEQGEPGPPGPPGTDGRPGPPGPAGPQGLPGEHGEPGQSGKKGESGLPG
VDGLPGPPGPQGPPGPPGAPGPMGQPGLPGELGFPGKGGEPGKPGVPGKDGLDGLAGIDG
AMGPRGERGADGLPGKTGSKGDEGPPGPRGPLGERGEAGAPGRPGADGARGERGIPGERG
TEGPFGAKGERGDKGEVGPRGLPGVPGNVANVIPQPGEPGKPGEKGEKGDQGKPGEMGPR
GLPGEQGFRGQPGAPGPKGDTGLSGEIGRVGDPGPPGAAGPPGPRGIPGSVGIPGIIGPP
GPAGQRGDKGDPGKPGQSGPQGPPGEPGVIGPPGPPGKGKDGQNGEPGPPGNQGLPGLKG
PPGPRGQAGLPGDRGSPGEGKEGPPGPPGKNGESGAVGSRGPPGVAGPQGPAGHNGLPGR
PGEKGSQGEPGKAADLSDLNLKDICSDCPAGPPGPPGLPGVPGDKGNQGPPGKNGQDGYL
GPPGPAGPQGPPGADGAKGIKGDQGPPGGPGDKGDKGHPGPPGHPGPAGLMGAPGNDGQP
GQVGPPGPPGEKGKEGLKGIQGPPGLPGMIGQPGKMGKDGRPGEPGELGKQGEPGPPGNP
GLRGLPGFKGHRGEPGPPGEKGEDGKPGSTGRDGKPGKEGPKGPPGLEGLLGPRGEPGKP
GDPGPSGKSGLPGTPGVRGDKGEPGNPGLPGFSGPKGPAGPPGPIGPEGKQGMTGRPGDR
GLRGDKGDPGTKGEKGQNGDPGMPGNPGPPGRKGHTGMMGMSGPPGEIGPPGPQGPSGNP
GIPGHKGESVSLEQMRRLVQEELAKQLDAKMAYLMAQIQPAHVKSTAGRPGPPGPPGKDG
SPGRQGAPGEPGMPGQNGGEGPRGPIGPKGDKGARGEKGEPGVGERGEQGPTGPIGPAGL
PGYGKDGSPGQAGAQGEPGNPGPHGQPGPPGPPGQCDPSQCAYYASLAQRPHTKNVKGK
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atggaattcagactgggatttaggatcacccttgtctggtttgtcctggccttgactctt
tccggagagagagtggaagcacagagggcaggttgtaaaaatgtccactatgacttgaca
tttatccttgatacctcatccagtgtgggaaaagaaaattttgagaaaattaggcaatgg
gtagccaatctggtagagtcttttgacgtagcacctgacaaaacaagagtggcagtggtt
cgctacagtgacacaccgaccactgagtttaccctggatcgatacaggaccctggaagat
gtgaagcaagctgcccgtaacatgcgctacctgggaggaaatacaatgactggggacgcc
atcagttacaccactaacaacatcttcatggagcagaacggagcacggccgcctgcgcga
ggcattcaaaaggtggccatccttctaacagatggccgaagtcaggattatgttctggaa
ccctccaaggcagctgccaaagctggcatccgaatgttcgccgtgggcatcggggaggct
ctgaaagaagagctggaggaaatcgcagctgagccaaagaatgcccacgtctttcacgtg
actgacttcaacgccattgataaaatcaggggcagactgaggaggaggctgtgtgagaat
gtcctgtgtccaaagatgaaggttcaacctgatcgctttaagcccaacagcaccagttat
gatcttgaagaggttccagggtttgacctgatggagtacttcaatgtgaaagacatcctg
ggaaccagagttgatgagagtcagagttcatatgtccgtcttgggacgatgccggtagtc
cagcaatcagaggatgtgtttcctcagggcttgccagatgaatatgcctttgtgacaacg
ttcaaattcaggaaaacctcaagacgggaagactggtacctctggcagatttttgacaaa
tatggaatcccacaggtgtctatccgtctggacggtgagaacaaagctgtggagtacaac
gcagttgggttgactaaagatgctgtcagagctgtgttcaagaatcctgaagtcgacaac
ctctttgaccgcaactggcacaagatcggtctcagtgtggaggccaagtctgtcgccctg
tatttggactgcaaacacatccagactctgccgatcgaagaccgcgaagacatagatatt
caggggaaaacagtgattggaaagaggctgtatgacagtgttccgatagactttgacctc
cagaggatgatgatttactgtgattccaaacatgcagaggtggaaacctgctgtgatctc
cccaccgggccatgccctaaaaaggttgtgacagaggcaccccctgtgcggatccccaca
ccaacacctactgttgcagagcaaaaaagaggtcctcaagcaaactgctcgtgccctgca
ggggagaagggaaacatcggcgcacgtggtcttccaggtctaaagggtgagattggccct
aaaggtgctatcggaccacaaggcatcaaaggggaaagaggagaatctggcaaattgacc
tctgtcaaaggtgacagaggggagaagggtgatagaggcacaatagggttaacaggttct
cctggacaaaagggagagaagggtagtggtggtgtgcctggtattgatggtctaactggt
gacaaaggggataaaggtgaagcaggcaggcttggtgctgcagggctaccaggtccaggt
ggacagaagggaatccaaggagatataggaattccaggtgctcctggaccaaagggtgtc
attggtgattctggtgtgaaaggagaaaaaggaactccgggagccggtggtctaccaggc
gtggacggattaccaggaaaatctggacttcctggaaaagatggtttgagaggactggct
ggagcacctgggccaaatggaatcaaaggcaacaagggagaaagaggccctcctggatta
cctggggatatggtacaacaacaaggcctgtggggtgaacagggagaacctggacctcct
gggccaccagggacagatggtcgcccaggacctcctggtcctgctggtccacaaggtctg
cctggtgagcatggggagcctggccaaagtggaaagaaaggtgaaagtggactaccggga
gtggatggccttcctggacctccaggtccccagggtccgccgggtccgccaggggcacca
ggaccaatgggacaacctggtctacctggtgaactaggatttccaggcaaaggaggagag
ccaggaaaacctggtgttcctggtaaagatggtctggatggtcttgctggcattgatggg
gctatggggcccaggggagaacggggagcagatggacttcctggcaagactggttccaag
ggtgacgaagggcctcctggaccaagaggtcctctgggggagagaggagaagctggcgcc
cctggtcgaccaggtgctgatggcgcacgaggagaaagagggattccgggagaaagagga
acagagggaccatttggggcaaaaggtgaaaggggtgacaagggtgaagttggaccgagg
ggactccctggggttccaggaaatgttgcaaatgtcatccctcagcctggagaaccaggg
aagcctggagagaagggagaaaagggggaccaaggaaaaccaggagagatgggtccaaga
ggcttacctggtgaacaaggtttccgaggacaaccaggagcacccggcccaaagggggat
accggactctcaggggagatcggtcgtgtaggggaccctggtccacctggtgctgcagga
cctcctgggccacgtgggataccaggaagtgtgggcattccaggcatcattgggcctccc
ggtccagctgggcagagaggagataagggtgacccaggtaaaccagggcaatctggtccc
caaggcccaccaggagagcctggtgtgattggacctcctggaccacccgggaagggcaaa
gatggccaaaacggagagccaggaccaccgggcaatcaaggactacctggactgaagggc
ccaccggggccacgcggacaggccgggttacctggggacaggggttccccaggggaaggg
aaagagggacctccggggcctccagggaaaaatggggaatcaggagctgtgggatcgaga
ggtccaccaggagttgcaggtcctcagggcccagcagggcacaatggtttaccaggaagg
ccaggagaaaagggatcacaaggagagcccggaaaagcagcagatctctccgacttgaat
ctgaaggatatttgctcagactgccctgcaggtcctcccggaccacctggactgccggga
gtccccggagataaaggaaaccagggacctcctgggaaaaatggccaagatggatatttg
ggaccccctggaccagccggacctcaagggcctcctggagctgacggggcaaagggtata
aaaggggatcaagggcctcctggaggtcctggagacaaaggagacaagggccacccagga
ccccctggccatccaggtcctgcaggattaatgggcgctcctggtaacgacggccagcct
ggccaagttggtcccccaggcccccctggagaaaagggtaaagagggtctcaaaggaatc
caaggaccaccgggtcttcctggcatgatcggtcaacctgggaaaatgggaaaagatggc
cgaccaggtgaaccaggagaacttgggaagcaaggtgaacctggacctccaggaaaccca
ggactccgaggactccctggcttcaagggccatagaggagagcctggacctccaggagaa
aagggagaggatgggaagcctggttcgacaggacgtgatggcaaaccaggaaaggagggc
cccaagggacctcctggcctagaaggacttcttggaccaagaggagagccgggcaagcca
ggtgatcccggaccatctgggaaatccggactccccggtacaccaggtgttaggggagac
aagggagaaccgggcaaccctggattgccaggcttcagtgggcccaagggacctgcaggt
ccacctggtcccattggccctgaaggaaaacagggaatgacaggccgacctggagatcgt
ggtctcagaggagataagggagaccctggtacaaagggagaaaaaggacagaatggagat
cccggaatgcctggaaatcctggtcccccaggcagaaagggccacacagggatgatgggc
atgtcaggaccaccaggtgaaattggacccccagggcctcagggaccttcaggaaatcct
ggtatcccgggacacaagggagagtcagtgtcactggagcagatgagaaggcttgtccag
gaggagctagccaaacaattagatgccaaaatggcttacctcatggcccagatccagccc
gcgcatgtgaagagtacagcgggtcgtcctggacctccaggccctccaggtaaagatggc
agcccaggacgacaaggggcccctggagaaccaggtatgcctggacaaaacggaggagaa
ggacctagaggaccaataggccctaagggtgataaaggagcaaggggggaaaaaggagag
cctggtgtcggtgagagaggagagcagggccctactggtcccataggtccagctggtcta
ccaggatatggcaaagacggaagccccggacaagctggagcccagggagaaccaggaaac
ccagggccacacgggcaacctggacctccaggtcctcctggccagtgtgaccccagccaa
tgtgcctactatgccagcctggctcaaagaccccacaccaaaaatgtaaaggggaaataa
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