Girardinichthys multiradiatus (darkedged splitfin): 124879839
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Entry
124879839 CDS
T08099
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124879839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmu03019
]
124879839
03036 Chromosome and associated proteins [BR:
gmu03036
]
124879839
Enzymes [BR:
gmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124879839
Messenger RNA biogenesis [BR:
gmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124879839
mRNA degradation factors
5'-3' decay
Decapping complex
124879839
Chromosome and associated proteins [BR:
gmu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124879839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
124879839
NCBI-ProteinID:
XP_047240554
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All DBs
Position
13:complement(42530791..42544154)
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AA seq
482 aa
AA seq
DB search
MATARTENLGPVMMGLNKQNGQLRGQTKPAVGPPASTQGKNPAGSNQDGGGIKFGDDWKK
CLQLPPKDNRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGR
DILARAKNGTGKSGAYLIPLLERIDLKKDHIQAIVMVPTRELALQVSQICIQLSKHLGGV
KVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDEADKLLSQ
DFVVLIEDIISFLAKNRQILLYSATFPISVQKFMVKHLQKPYEINLMEELTLKGITQFYA
YVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRN
RVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLA
INLITSEDRFNLKAIEEQLVTDIKPIPSSIDKSLYVAEFHSSSGDCEVEEVEESPQRQQD
ST
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggcccgaacggaaaatcttggtccggtcatgatgggactgaataagcagaac
gggcagctcagaggacagaccaaacctgctgtaggaccaccagcatcaactcaaggaaag
aatccagccgggagcaaccaggacggaggaggaattaagtttggagacgactggaagaaa
tgcctacagctccccccaaaggacaacagggtcaaaacctccgacgtcacgtccacgaag
gggaacgagtttgaagattactgcttgaaaagggaactcctgatgggaatctttgagatg
ggctgggagaaaccttcacctatccaggaggagagcattcccatcgcgctgtctggacgg
gatattctggctcgagcgaagaacggaacagggaaaagtggagcttatctgatcccactg
ctggagaggatagacctgaagaaggaccacatacaggccatcgtcatggtgcccacacgt
gagctggctttgcaagtgagtcagatatgcatccagctcagtaaacatctgggaggagtc
aaagtcatggcgacgaccggaggaaccaacctgcgggacgacattatgcgcctggatgag
acggtgcatgtggtcatcgccacgcccggtcggatcctggacttgataaagaagggcgtg
gcgaaggtggacagggtccagatgatggtgatggacgaggcagacaaactgctctctcag
gactttgtggtgctcatcgaggacatcatcagcttcctggccaagaacaggcagatcctg
ctctactcagcaaccttccccattagtgttcagaagttcatggtgaagcatcttcagaaa
ccctatgagatcaacctgatggaggagctgaccctgaagggcatcactcagttctacgcc
tacgtgacggagcgacagaaggtccactgcctcaacacgctcttctccaggcttcagatc
aaccagtccatcatcttctgtaactccactcagagggtggagctcctggccaaaaagatc
actcagctgggatactcctgcttctacatccacgccaagatgatgcaggaataccggaac
cgcgtgttccacgacttcagaaacgggctgtgcaggaacttggtttgcaccgatctgttc
accagaggaatcgacatccaggctgtgaacgtggtcatcaactttgatttccctaaaaat
gcagaaacgtaccttcatcgcatcggaagatcagggaggtttggtcacctgggtctggcc
ataaacctgatcacctcagaggaccgcttcaacctgaaggccattgaggagcagctggtg
accgacatcaagcccattcccagcagcatcgacaagagcctttatgtggccgagttccac
tcgagcagcggcgactgcgaagtggaggaggtggaggagagccctcagcgccagcaggac
agtacctaa
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