KEGG   Girardinichthys multiradiatus (darkedged splitfin): 124879892
Entry
124879892         CDS       T08099                                 
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
  KO
K06236  collagen type I alpha
Organism
gmu  Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04510  Focal adhesion
gmu04512  ECM-receptor interaction
gmu04518  Integrin signaling
gmu04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:gmu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    124879892 (col1a2)
   04518 Integrin signaling
    124879892 (col1a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    124879892 (col1a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    124879892 (col1a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:gmu00536]
    124879892 (col1a2)
Glycosaminoglycan binding proteins [BR:gmu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   124879892 (col1a2)
SSDB
Motif
Pfam: Collagen COLFI
Other DBs
NCBI-GeneID: 124879892
NCBI-ProteinID: XP_047240669
LinkDB
Position
13:complement(19798625..19817739)
AA seq 1352 aa
MLSFVDTRILLLLAVTLYLTSCQSSGPRGDKGPRGDRGPRGPNGKDGKPGLPGPPGPPGP
PGLGGNFAAQYDGAKAPDPGPGPQGLMGPRGLPGMPGPQGPQGQTGHSGEPGQPGHDGPV
GARGPPGPPGKSGEDGNNGRPGKPGDRGVTGPQGARGFPGTPGLPGMKGHRGYTGIDGRK
GEPGSAGMKGESGASGSSGSPGLAGQRGQPGERGRPGPAGPSGARGADGNVGPAGPAGPL
GAAGPPGFPGGPGPKGETGAAGSTGPSGPQGSRGEPGSNGAVGPVGPTGNPGTNGLNGAK
GAAGTPGIAGAPGFPGPRGGPGPQGPQGAAGPRGLSGDPGLQGIKGDTGPKGEPGNSGPQ
GPPGTQGEEGKRGPTGEIGANGPAGNRGARGTPGSRGLPGADGRTGPIGMPGARGATGSF
GPRGPPGDAGRAGEPGPAGLRGFPGSPGSSGPPGKEGPSGLAGQDGRSGPPGPSGPRGQP
GNIGFPGPKGPSGESGKPGEKGPTGPTGLRGAPGPDGNNGVTGAMGAAGGPGEKGEQGPA
GAPGFQGLPGPAGPSGEAGKPGERGMPGEQGAAGPAGGKGERGNPGSAGASGAQGPLGPR
GPAGAPGSDGGKGEPGAAGAAGSPGHQGPGGMPGERGVAGGPGAKGEKGENGHRGPDGNS
GRDGSRGMAGPPGPPGPTGANGDKGEIGSFGPSGPAGARGASGERGEVGPSGAPGFAGPP
GLDGQAGARGERGPAGVKGEAGSAGAAGPAGQSGPAGPSGPAGAPGARGDSGPPGLTGLP
GAAGRVGAPGPAGIVGPSGPTGSAGKDGPRGLRGDPGPAGPSGEQGMVGPPGAPGEKGPS
GESGPVGPPGTPGSSGPLGLQGFVGLPGTRGDRGTPGGAGALGEPGRVGPPGPSGARGPP
GNIGMPGMTGPQGEAGREGSPGNDGPPGRPGASGFKGDRGEPGSPGALGLAGTPGPAGPT
GGAGRPGNRGEAGPQGSSGAVGPAGARGAPGPAGPRGEKGVAGEKGDRGMKGLRGHPGLQ
GMPGPSGPAGENGPAGALGLAGPRGPSGPNGPPGKDGRSGTHGPMGPPGSRGPPGYVGPV
GPPGAPGLAGPPGPSGGGYDVSGYDEYRADQPALRAKDYEVDATIKSLNTQIENLLTPEG
SRKNPARTCRDIRLGHPDWSSGFYWIDPNQGCINDAIKVFCEFTTRETCIYAHPESIARK
NWYRTTENRKHVWFGETINGDTEFTYNDETLSPQSMATQLAFMRLLSNQASQNITYHCKN
SIAYMDSESGNLKKAVVLQGSNDVELRAEGNSRFTFSVLEDGCTRHTGEWSKTVIEYRTN
KPTRLPILDIAPLDIGGPDQEFGLDIGPVCFK
NT seq 4059 nt   +upstreamnt  +downstreamnt
atgctcagctttgtggatactcggattctgttgctgcttgcagtaacgttatacctaacg
tcatgccaatcgtcgggtcccagaggagacaaaggacctcgaggtgacaggggtcctcgt
ggcccaaatggaaaagatggcaaacctggactccctggcccccctggccccccaggcccc
cctggactcggaggaaactttgctgctcaatatgatggtgcgaaggcccctgatcctggc
cctggaccccaaggattaatgggacccagaggtctcccaggaatgcctggaccccaggga
cctcaaggacagacaggacactctggtgaacccggacagcctggacatgatggtcctgtt
ggtgcccgtggtccccctggaccacctggcaaaagcggagaagatggaaataacggcagg
cctggcaagcccggagacagaggtgtcacaggccctcagggtgctcgtggattcccagga
acccctggacttccaggaatgaagggacacagaggttacactggtattgatggacgcaag
ggagaacctggttctgctggcatgaagggtgagtctggtgcctctggatcttctggaagt
cctggactggctggacaacgcggtcaacctggtgagaggggtcgtcccggccctgctggg
ccttctggtgctcgtggtgctgatggcaatgttggacctgctggtccagctggtcctttg
ggtgctgccggtcccccaggcttcccaggtggtcccggccccaagggagagactggagcc
gctggaagcactggcccatctggacctcaggggagtagaggagagcccggatccaacggt
gctgttggcccagttggtcccactggcaaccctggtactaatggtctgaatggagccaag
ggagctgctggaacccctggcattgctggagctcccggtttccccggaccaagaggagga
cctggacctcagggccctcagggtgctgctggaccaagaggactttctggtgatcctggt
cttcagggtattaagggagacactggtcccaaaggagagcctggcaacagtggtcctcag
ggacctcctggaactcaaggtgaggagggcaagagaggacccactggtgagattggtgct
aatggacctgctggcaaccgtggtgctagaggtactcctggaagccgtggattgcctggt
gctgatggaagaactggcccaattggcatgcctggtgcccgtggtgccactggttccttt
ggacctcgtggaccccctggagatgctggtcgtgcgggcgagcctggtcctgccggtctc
agaggtttcccaggaagccctggaagctccggacccccaggaaaggagggaccttcaggt
cttgctggacaagatggccgttctggacctcctggcccaagtggacctagaggccagccc
ggaaacattggtttccctggacccaaaggaccctctggagagtctggcaaacctggagag
aagggacctactgggcccactggactgagaggagcccctggacctgatggcaacaacgga
gtcacaggcgccatgggagcagctggcggtcctggagagaagggagagcagggaccagca
ggagctcctggcttccagggtctgcctggacctgctggaccttctggtgaggctggcaag
cctggagaaagaggcatgccaggagagcagggagcagctggaccagctggtggcaaggga
gagcgtggtaacccaggttctgctggagcctctggggctcagggaccacttggaccccgt
ggaccagctggagcccctggatctgatggtggcaagggagagcctggagctgccggagct
gccggcagtcctggacatcaaggacctggtggcatgcccggtgagcgtggtgtagctggt
ggtccaggagccaagggagagaagggagagaatggacacagaggccctgatggaaattct
ggcagagatggttcccgtggcatggctggacctcctggtcctcctggacccactggagcc
aatggtgataagggtgagattggttcctttggacccagtggccctgctggagctcgtgga
gcctctggtgagcgtggagaggttggaccttccggagctcctggatttgctggcccccct
ggtctagatggtcaggctggagccagaggagagcgtggacctgctggagttaagggggaa
gctggatccgctggcgctgctggacccgctggacagtctggacctgctggtccttctggt
cctgctggagctcctggtgctcgtggagactctggccctccaggtctgactggtttacct
ggtgctgctggcagagttggtgctcctggtcctgctggtattgtgggaccatctggcccc
actggttccgctggcaaagatggacctcgtggtctccgtggtgaccctggccctgctggt
ccttctggtgagcagggaatggttggaccacctggtgctcctggagagaagggaccttct
ggagaatctggccctgttggacctcctggtactcctggaagctctggacctcttggactt
cagggattcgtgggtctgcctggtactagaggagatcgtggtacacctggcggtgctggt
gctttgggagagcctggaagagttggaccccctggtcccagtggagcccgtggtccccct
ggcaacattggcatgcctggtatgaccggacctcaaggagaggctggacgtgagggtagc
cctggcaacgatggaccccctggtcgtcccggtgcctctggattcaagggagaccgtggt
gagcctggatctcctggtgccttgggactcgctggaactcctggacctgctggaccaact
ggaggtgctggcagaccaggaaaccgtggagaggctggtccacaaggctcctctggagcc
gttggccccgctggagctagaggcgcccctggacctgctggaccccgtggtgagaaggga
gttgctggagaaaagggagacagaggcatgaagggtcttcgtggacatcctggtcttcag
ggaatgcctggaccttctggacctgctggtgagaacggacctgctggagcacttggactc
gccggacccagaggaccttctggacctaatggaccccctggtaaagatggtcgatctggc
acacatggtcctatgggtcctcctggttcccgtggacctcctggatatgttggaccagtt
ggtcctcctggagctcctggtctggctggacctcctggcccctctggtggtggctacgat
gtctctggatacgatgagtacagagctgatcagccagctctcagagccaaggactatgaa
gtcgatgccaccatcaagtctctcaacactcagattgagaacctccttacccccgaggga
tccagaaagaaccctgctcgcacctgccgtgacatcaggctcggtcatcccgactggagc
agtggattctactggattgaccccaaccagggctgcatcaacgatgccatcaaggtcttc
tgtgagtttacaacccgtgagacctgcatctatgcccaccctgagagcatcgcacgcaag
aactggtacagaaccacagagaataggaagcatgtgtggttcggagagaccatcaacggt
gataccgagtttacctacaatgacgagaccctcagcccacagagcatggccacccagctg
gctttcatgcgcctgctttccaaccaagctagccagaacatcacctaccactgcaagaac
agcattgcctacatggacagtgagagcggcaacctgaagaaggccgtggttctccaggga
tccaacgacgtggagctcagagccgagggcaacagccgctttaccttctctgtgctggag
gatggctgcactagacacactggtgagtggagcaagacagtgattgagtacagaacaaat
aaaccaacccgcctccccatcctcgacattgcacctttggacattggtggacctgatcag
gagtttggtttggacattggcccagtctgtttcaaataa

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