Girardinichthys multiradiatus (darkedged splitfin): 124879965
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Entry
124879965 CDS
T08099
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124879965 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmu03021
]
124879965 (smarcc1b)
03036 Chromosome and associated proteins [BR:
gmu03036
]
124879965 (smarcc1b)
Transcription machinery [BR:
gmu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124879965 (smarcc1b)
Chromosome and associated proteins [BR:
gmu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124879965 (smarcc1b)
PBAF complex
124879965 (smarcc1b)
GBAF(ncBAF) complex
124879965 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
SWIRM-assoc_3
SpeFL
DUF919
Motif
Other DBs
NCBI-GeneID:
124879965
NCBI-ProteinID:
XP_047240786
LinkDB
All DBs
Position
13:20866528..20882722
Genome browser
AA seq
952 aa
AA seq
DB search
MSGGTNLGFPGTSQALANRKKDSSPSARFWECPDTLAQLEVVRQWTGKHYKKYVLVDAPS
CQVLAAVTLQLLQFQEDAFGRQVPNPAITKLPAHCFLDLQPGGGLCHILGTAYKFKVEQG
WRRFDLQNSSRTERNIEMFGAIEKALIQNNCMSLPLVFIDPAVDLELSSRLTGIIIKHKG
AVTEDRIMASHLVYGPLASTEEDEWMRPVMQKDKHILVHWGMHPDSYDSWLSSSDVEGDI
EELPHLERPWRVNAGWVLDTDVFNEWMNEEDYCVNERNVPLILRQRIHLQEDQDSGSIPS
KKKRRSPSPSTDGRKKGKKGRRRGQQEEEPEEDLTKDMEDPTPVPNMEEVILPKNVNLKK
DSENTPVKGGVMADLDDQEEDFPGREDDEGRSEISRLSEVEDTITEQTHHIIIPSYTSWF
NYNSIHSIEKRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLSSTSCRRNLTGD
VCALIRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQHKPLQVSA
SQHMLNFPERSREKPSDCQNFGLRTDIYARKHPKTKGANAGREWTEQETLLLLEALEVYR
DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAYQPVPFSQSENPVMSTV
AFLASVVDPRVASAAAKAALEEFSRAQENALYKTSDPSTHPEQTDTMEADKLDSNPYQVP
VRLDGVKMEPGVSKLEGDQVKREHGESILAEEGDGRGEDGENRREGDGDDGRRVMELDLV
EGSVSTAAAVALSSAASRAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMD
REKEALEQQRQQLLTERQTFHTEQLKQAEMKVRQQRELQSQPGYTAQHSGQSVANRMVPG
GGTAQTMAPRHPGAPNGMFCLTDTPVCPVSDPSSQPDGIASAQPTPPSSSQN
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaggaacaaacctcggctttccggggacaagccaagcgttggcgaatcggaaa
aaagacagcagtccctcagctcggttctgggagtgtccggacactttagcccagttggag
gtggtgcgacagtggaccgggaagcattacaaaaagtatgtgttggtggatgctccatct
tgtcaagtcctggctgcagtcacgctgcagcttctccagtttcaggaggatgcctttggc
agacaagttcccaaccctgcaatcacaaagctaccagcacattgcttcctggacttgcaa
ccaggtggcggactctgccacatcctcggcactgcttataaattcaaggttgagcaaggc
tggagacggtttgacctgcagaattcatcaagaactgagagaaatatcgagatgtttggt
gcaattgagaaagctctaatccagaacaactgtatgtccctgccattggtatttattgac
ccggctgttgatctggagctgtccagcaggctcactggtatcatcatcaaacacaagggt
gcagttactgaggaccggataatggccagtcatcttgtatacggcccgcttgcttctaca
gaggaggatgagtggatgcgtcctgttatgcaaaaggataaacacattttggtccactgg
ggcatgcacccagacagttatgacagctggctgtcctcaagtgatgtggaaggagacatc
gaagagctgccgcacttggaaaggccatggagggttaatgctggttgggtcctggacaca
gacgtgtttaatgagtggatgaatgaggaggactattgtgtaaacgagaggaatgtgccg
ctcatcctgcgacagcgaatccacctacaagaagatcaggactctgggtccattccgtct
aaaaagaagagacgctcgccctctccttccactgacggcaggaaaaaaggaaagaaaggg
agaaggcgcggccaacaggaagaggaaccagaagaggacctgaccaaagacatggaggac
ccaacacctgtgccaaacatggaggaagtcattctgcccaagaatgtgaacctgaagaaa
gatagtgagaatacgccagtgaaaggaggcgtcatggcagacctcgatgatcaggaagag
gactttcctggaagggaagatgatgagggaagaagtgagatctctcgcttatctgaggta
gaggacaccatcactgaacaaactcatcatattataataccaagctacacatcatggttc
aactataacagcattcactcgatagagaaacgtgctcttcctgaattcttcaatggaaag
aacaaatcaaaaaccccggaaatctacctggcgtatcgtaacttcatgatcgacacatac
cggctgaacccccaggaatacctcagctcaacgtcctgcaggcgcaacctcactggagac
gtctgtgctcttataagggttcatgcatttttagagcagtggggtttgatcaactaccaa
gtggatgcagagagccgacccctccccatgggacctcctcccacacctcacttcaacgtc
ctggccgacacaccatccgggttggcacccctgcagcacaaaccccttcaggtgtccgcc
tctcagcacatgttgaatttcccagaaaggagcagagagaaaccttccgactgccagaac
tttggtcttcgcaccgacatctatgccaggaagcacccaaagactaaaggagcaaatgca
ggacgagagtggacagagcaggagacactcttactgttggaggccttagaagtctacaga
gacgactggaacaaagtatcagagcacgtgggctccagaacgcaggatgaatgcatcctg
cactttctacgcttgcccatcgaggacccctacctggaggactcgtcggcctctctgggc
cctctggcctatcagcctgtgcctttcagccaatcagaaaaccccgttatgagcactgtg
gccttcctggcgtctgtggtagatccacgggtggcgtcggccgcggcgaaggcagcactg
gaggagttctccagagcccaggagaacgcactgtataaaacttctgacccatccacccac
ccagaacaaacggatacaatggaagctgacaaactggactctaacccctatcaggtccct
gtgaggttggatggagttaagatggaacctggtgtatcaaaactggagggagatcaagtt
aaaagagaacatggtgaaagtattctggcagaggagggtgatggacggggggaagacggt
gagaacaggcgggagggagatggggacgatgggaggagagtgatggagctggatctggtg
gagggtagcgtttccacggcagcagcagtagctctgtcatctgctgcctcaagggccaag
cacttggcagcagtagaagagaggaagataaagtccctggtggctctactggtggagaca
cagatgaagaagttggagatcaaattaagacattttgaagagctggaaaccatcatggac
agagagaaagaggctttggagcagcagcgccaacagttgctgacagagagacagactttt
cataccgagcagctgaaacaggcggagatgaaggttcgccagcagagggagctgcagagt
cagcccggttatacagcgcaacattcaggccagtccgtggccaacaggatggtacctggt
ggaggaaccgctcagacaatggcccctcggcaccctggagctccaaatgggatgttttgt
ttgacagatactcctgtctgtcccgtctcagacccatcatcacagcccgatgggatagca
tctgctcagcccactcctccgtcatccagtcagaactga
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