Girardinichthys multiradiatus (darkedged splitfin): 124880311
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Entry
124880311 CDS
T08099
Symbol
dhx15
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124880311 (dhx15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmu03041
]
124880311 (dhx15)
03009 Ribosome biogenesis [BR:
gmu03009
]
124880311 (dhx15)
Enzymes [BR:
gmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124880311 (dhx15)
Spliceosome [BR:
gmu03041
]
Complex A
U2 snRNP components
U2 related factors
124880311 (dhx15)
Complex B
124880311 (dhx15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
124880311 (dhx15)
Ribosome biogenesis [BR:
gmu03009
]
Eukaryotic type
90S particles
Helicases
124880311 (dhx15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_N
HA2_C
Helicase_C
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
124880311
NCBI-ProteinID:
XP_047241313
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All DBs
Position
14:21762765..21803997
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AA seq
673 aa
AA seq
DB search
MSLIHHTLFKRINDLLIGVNEPSIQIRRERDNNRDRNRDRNRNXDXESAGGPVMSARASW
SFVNQAPIQQQLNRFTYLLHSTRYYESLKKRVRLPVWEYREILXMQNPSFALVGETGSEK
TTQIPQWCVDTVRLLAASLRAVACTQPRRVADEMDVLLGQEVGYSIRVEDYISAQNLLRY
MTDGMLLREATNDPLLERYGVIILDEAHERTLPTDILVGVLKKXVCQRSDLKVIVMSSML
DARKCQVYFDNCPLSTIPGRTHPVMFYTPQPERDYLEAAIRTAIQIHMSGEDEREILLFL
TGQEEIYEACKRIRREFDDLGPQVSDMKIIPLYSTLPPQQHQRIFEPPPPHKXGAIGRKV
VVSRNIAETSLTIDGVVFVIDPGFAKQKACNPRIRVESLTVTAISKASAQQRAGRAGXTR
QGKCFRLYTETAYKTEMQPVAPALSSPAPETPMRMLELLNYLAALNDDCDLTELGSMMAE
FPLDPQLAKMVITSCQFNCSNEVLSISAMLSDHESTQWCCDNFVHYRSLMSADNVRQQLS
WTASNCQGIAPISTALISTSGHYLTVKDNQVVQLHPSTVLEHKPEWVLYDEFVLATKNTF
TRADVKPEWLAQTAPQYYEMSNFPRCEASRQLSIPSAGNSQTINGSSSVPVDQASNGRGS
CMENTFNSRGQLT
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcattcaccacaccttattcaaacgaattaatgacctccttataggggtcaat
gagccatcaattcaaatcaggcgtgaaagagacaacaatcgggacaggaacagggatcgg
aaccgtaacnnggactgagagtccgccggaggccccgtgatgtcagctagagcaagttgg
agtttcgtgaatcaggctcctattcagcagcagttaaaccgcttcacctacctgctccat
tcgacacgctactatgagagcctgaagaaacgagtgcggctcccagtctgggaatacaga
gagattttgnngatgcagaacccgtctttcgcgctggtgggagagacgggctctgaaaag
accacgcagatcccccagtggtgtgtagacacggtgcgtttactggcagcatcactgaga
gcggtggcctgcacccagcccaggagggtggcagatgagatggatgtcttgctgggtcaa
gaggtgggctattccatcagggttgaggactacatctctgcccaaaatttgctcaggtac
atgacagatggaatgttgctgcgggaggctacgaatgatcccctgctggagcgctatggt
gtcatcattctggacgaggcccacgaacgcacattacctacagacatcctggtgggggtt
ctcaagaagnaagtctgccagaggtctgacctgaaggtcattgtcatgagttcgatgctg
gatgccagaaagtgccaagtgtattttgacaactgcccgctgtcaaccatccctggacgc
acgcaccctgtgatgttttacacaccgcaaccagagcgagactacctggaggcggccatc
cgcaccgcgatccagatccacatgtctggggaagatgagagggagattctgctcttcctc
actggacaagaggaaatctacgaagcctgcaagcgaatcaggcgggagtttgatgacctg
gggccccaagtcagcgacatgaaaatcatccctttgtactccaccctgccaccacagcag
catcaaagaatctttgagccacctccaccacataaanctggtgctattggaagaaaggtc
gtcgtgtcaagaaacattgccgagacgtccctcaccatcgacggagtcgtgtttgtaatt
gatcccggatttgccaagcaaaaggcgtgtaacccgcgcatcagagtggaatcccttacg
gtcacagccatcagtaaggcctcagctcagcagagagcaggtcgcgccggatgaacacgc
caaggaaagtgtttccgtttgtacacagagacagcatacaagacagaaatgcagcccgtc
gctcccgctctgtcctctccagccccagagaccccgatgcgaatgctcgagctgctaaac
tacctggcagctctcaatgacgactgtgacctgaccgagctgggctccatgatggcagag
ttccccctggacccccagctcgccaagatggtcatcaccagctgccagttcaactgttcc
aatgaggtcctctctatcagcgccatgttgtcagaccacgagtccacccagtggtgctgt
gataactttgtacactaccgctcgctgatgtcagcggacaacgtccggcagcagctgtca
tggaccgcttcaaactgccaaggaatagcaccgatttcaactgctcttatctcaacatcc
ggccattacctgacagtaaaggacaaccaggttgtgcagctgcatccctccactgtgctg
gagcacaaacctgagtgggtgctctatgacgagttcgtactcgccaccaaaaacaccttc
acgcgcgccgacgtcaaaccagagtggctggcgcaaacggccccgcagtactacgagatg
agtaacttcccccggtgtgaagcatcgagacagttgagcatcccttctgcagggaattcc
cagacaattaatggatccagctcagtacctgttgaccaggcttcaaacgggcgtggatcg
tgcatggagaacactttcaactcaagagggcagctgacctga
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