Girardinichthys multiradiatus (darkedged splitfin): 124880403
Help
Entry
124880403 CDS
T08099
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu04382
Cornified envelope formation
gmu04510
Focal adhesion
gmu04512
ECM-receptor interaction
gmu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124880403 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124880403 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124880403 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
124880403 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gmu04147
]
124880403 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
gmu00536
]
124880403 (col4a5)
Exosome [BR:
gmu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
124880403 (col4a5)
Glycosaminoglycan binding proteins [BR:
gmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124880403 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
124880403
NCBI-ProteinID:
XP_047241451
LinkDB
All DBs
Position
14:33337058..33416105
Genome browser
AA seq
1692 aa
AA seq
DB search
MNRDLKRQRQLGWAVILLVLCAALELSDSAACHGCGSSKCDCSGVKGDKGERGFPGLTGQ
PGVPGFPGPEGPIGSRGEKGSDGPQGLTGPKGIRGPTGLPGFPGTPGLPGLPGQDGPPGP
RGVPGCNGTKGDPGFPGTPGIPGQQGRLGPPGLPGPKGDPGDVISTNRFGVKGEVGLPGL
PGAPGLSGPTGLQGPIGPPGPRGYPGTDGQPGPPGPKGNMGLNFEGPKGEKGDPGLQGPP
GPPGTGQGEQSRPPPSEIQRGDKGDPGPPGPQGDPGFPGPPGPSGGQKGEKGEPGEAGKR
GKPGKDGDPGPPGFLGTKGVSGSPGVPGRDGERGLKGDRGFPGPPGLVIGSAPNGGIGPK
GEPGLPGNSGTKGERGPQGLMGPAGAPGIPGIGGSGPPGAPGSLGAKGQKGDPGTPSIAL
PGPPGRPGPPGVSGLQGPPGPPGYSIPIEDCLPGQPGTPGIQGETGFPGEQGQKGEKGET
CVNCIERTYPIPGPPGPPGPPGFQGPTGQQGIKGDKGFPGQQGLVGPPGIPGPQGGPGFP
GEKGEPGEALTLTGVRGEKGDTGFPGPPGLPGLDGRPGRDGQPGTPGPKGAPGSLLVKGE
RGPPGETGPSGIPGDRGPPGPPGFGIPGPKGERGFQGISGRPGVAGAPGLRGEPGPTITE
KGQPGPRGQDGERGQPGLQGSPGQPGQPGFPGLAGPKGDPGLPGIGLPGPPGAKGFPGIP
GQPGAPGNVGRPGIDGLAGQSGFPGPKGEPGFGLPGPPGQPGLAGPKGFTGPKGDSGFPG
SPGGPGRPGFDGLPGPKGDPGTPGLPGAPGLPGSSTSGTQGRPGPPGPPGPMGPPGEKGY
QGANGAKGDPGPPGLDIPGLPGDKGNPGFPGPPGPIGIPGPPGGPGRDGAPGLSGPKGDM
GPMGPPGPSGGPGSPGRSGVQGNKGEPGVPGADGLPGAFGPTGDKGERGFPGPPGIPGPV
NLNEKGIKGDAGQQGLPGSPGPKGIEGLPGEPGTPGLDGRPGIPGPPGLKGEPGIPGSPG
GSGPPGLKGSMGDMGVPGPPGLKGTLGFPGRPGSSGQPGIPGPSGQKGEPGSAGVGPPGL
PGPKGDAGQPGFPGSPGTKGNPGAPGLPGLPGLPGDKGDVGLAGFQGPPGMPGPKGLDGG
PGAPGVPGAPGRQGEPGRTGLPGPVGEKGQPGRDGIPGPAGIKGEPGISGFGVPGPPGVQ
GLPGEKGDTGLPGPVGNPGFPGPKGDVGFQGLPGPPGVNGPPGPPGQSIQGPKGFQGPPG
PPGRAGPSGPPGSPGPEGSRGLPGSGGVKGEKGYPGTPGQPGLPGQKGDLGFPGAPGSAG
GPGGPGMKGDIGFPGVSGFPGQKGEPGLPGPSGLPGDLGADGIPGPPGDPAPSSEVNVKG
ERGPPGPRGSPGPPGLPGPSGPPGPLGPPGTPGDPGASGPPGFNGPPGRKGETGFVGRPG
QKGNPGPPGSDGPQGPPGIPGSVSAAHGFLVTRHSQTEVAPDCPLGTSPIYDGYSLLYVQ
GNERAHGQDLGTAGSCLRRFSPMPFMFCNINNVCNFAARNDYSYWLSTPKPMPMSMEAVT
GENIKPYISRCSVCEAPAMVIAVHSQTIQVPLCPANWNLLWIGYSFMMHTSAGAEGSGQA
LASPGSCLEEFRSTPFIECHGRGSCNYFSNSYSFWLATVELSDMFRKPQSETLKAGNLHT
RVSRCVVCMKRT
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgaatagagacttgaagcgccagcgacagctcggctgggctgtgattttgctcgtactg
tgcgccgctttagaactctccgactctgcggcttgccatggatgtggaagttccaagtgt
gattgcagtggagtaaaaggagacaagggagagaggggtttccctggtcttaccggacag
ccaggggtcccagggtttcctggacccgagggaccaatcggatccagaggagagaaggga
agtgatggacctcagggactaactggtccaaaaggaataagagggccaactggattacct
ggatttccaggaacgccaggacttccaggtctgccaggacaggacggtccccctggccca
agaggagtgccgggctgtaatgggacaaagggggatcctggttttccaggaactccagga
atacctggacaacaaggacgtctaggtccacctggtctcccaggaccaaagggagaccct
ggtgatgtgatttccactaaccgttttggagtaaaaggagaagttggattgcctggattg
ccgggagctccggggctttctggacctacaggtttacaaggcccgatcggccctccggga
cccagaggctatccgggtactgatggtcaaccaggtcctcctggacctaagggtaacatg
ggtttgaacttcgaaggacctaaaggagaaaagggcgacccaggcttgcaaggacctccc
ggtcctccaggaacaggacagggggagcagagcagacccccaccatcagagattcagaga
ggggacaagggtgaccctggacctccaggcccgcaaggtgaccctggctttccaggtcca
cctggtccctctggtggacagaaaggagaaaaaggagaaccaggagaagcaggcaaacga
ggaaaacccggcaaagacggagacccaggtcctcccggatttcttggaaccaaaggagtg
tctggttctccaggtgttccaggcagggatggagagagaggactaaaaggtgatcgagga
ttcccgggacccccaggattggtaattgggtccgcacctaatggtggtattggtccaaaa
ggtgaacctgggcttcctggaaattctggaactaaaggagaacgaggaccacaaggtcta
atggggcctgcgggagctccaggaattccaggcataggtggcagcggccctcctggagct
ccaggttccttaggagccaaaggtcaaaagggagaccccggcactccttcgattgctttg
cccggtcccccaggacgtccaggaccccctggggtttctggtctacaagggcccccagga
cctcctggatattccattccaattgaagactgcctacctgggcagccaggaactcctggg
atccagggtgagacagggttccctggagagcagggccagaaaggtgagaagggagagacg
tgtgtgaactgtatcgaaagaacatatcctattcccggccctccagggcctccaggaccg
ccgggatttcaaggccctactggccagcaaggtatcaagggagacaaaggttttccagga
caacaaggccttgttggaccccctggtatccctggtcctcaaggtggtccaggcttccct
ggagagaagggagagccaggagaagcactcacactcaccggtgtaagaggagagaagggt
gacactggtttccccggaccacccggtctccctggtctggatggtcgacccggtcgtgac
ggacagcctgggactcctggtcccaagggagctcctggctcgctactcgtgaaaggagaa
cgaggtccgcctggtgagacaggtccctccggcattccgggagacagaggtcccccaggt
ccacctggctttggaattccaggtccaaaaggagagagaggttttcaaggcatctcggga
agacctggcgttgccggggcaccaggtcttagaggggagccaggtccaactatcacagag
aaaggtcagcccggacccagaggacaggatggcgagcgaggacagcctggtctacaaggt
tccccgggtcagcctggacagcctggcttcccaggtttggctggaccaaagggtgatcct
ggactaccaggcattggactcccaggtcctccaggagctaaaggattcccaggtattcca
ggtcagccaggagcacctggaaatgtaggcagaccaggaatagatggacttgctgggcag
tcagggtttcctggaccaaagggcgagccaggctttggacttcctggtcctcctggtcaa
cctggactagcaggacctaagggtttcactggaccaaaaggagattctggtttccctggc
agcccaggcggaccagggcgacctggatttgatggactgccaggacctaaaggggatcct
ggcacacctggtctacccggagctcctgggctccctggaagctccacaagtggaacacag
ggtcgtccaggccctcctggacctccaggcccaatgggaccaccaggcgagaaaggatac
caaggagcaaacggcgcaaaaggagacccaggtccaccaggcttagacatcccaggtctg
ccaggtgacaaaggaaatcctggttttccaggtccccctggtccaataggaatcccagga
ccccctggaggacctggaagggatggcgcacctggattatcaggtccaaaaggcgacatg
ggtccaatgggacctccaggaccatcagggggacctggctctccagggaggtctggcgta
caaggaaataaaggtgaaccaggagttccaggtgcagatggccttccaggtgcttttggt
cctaccggagataagggagagagaggtttcccgggacccccaggaatccctgggccagta
aatttaaatgaaaaaggaatcaaaggagatgctggacaacaaggtttaccaggctctccc
ggaccaaaaggcattgaaggtcttcctggtgagcccggaacacctggactagatggacgc
cctggaattcctggacctccagggcttaagggcgaacctggtatcccagggagtcctggt
ggttctggacctccaggtctgaaaggcagcatgggagatatgggagttccaggaccgcca
gggttgaaaggtacattaggttttccgggtaggccaggatcctcaggtcagccaggaatc
cctggcccctcgggacaaaaaggtgaaccaggttctgctggcgttggaccaccagggtta
ccaggaccaaagggagatgcaggtcaaccaggattcccaggaagtcctggaaccaaagga
aatcccggagcacctggtcttcctggtttaccaggcttaccaggggataaaggagatgta
ggccttgcaggtttccaaggtccccctggtatgcctggtccaaagggtcttgatggtggg
cctggtgccccaggtgtcccaggagctccaggtagacaaggagagcctggtcgaacagga
ctacctggaccagttggagagaagggtcagccgggaagagatgggatcccaggaccagcc
ggaatcaaaggagagccaggaatctctggctttggtgttcctggtcctcctggggttcaa
ggtctgccaggtgagaagggagacacaggtcttcccggtccagttggcaacccaggtttt
cccggccctaaaggggacgtcggttttcaaggtttaccaggtcctccaggtgtcaatggc
cctccaggacctccgggacagtcaatccagggccctaaagggtttcaaggacctcccgga
ccacctggaagagcaggcccctcaggtcctccaggttcacctgggccagagggttcccgc
gggctcccgggaagcggtggtgttaagggagagaagggttatcccggaactcccggtcag
cctggccttcctggtcagaagggagatcttggttttccaggagcgccgggctcagctggt
ggtcctggtggtcctggtatgaagggagacataggatttccaggtgtttccggcttccca
ggacaaaagggagagccaggactgcctggtccaagtggccttcctggagatcttggtgca
gacgggatccctggccctcctggagatcctgctccaagttcagaagtaaatgtgaaaggc
gagagagggcctcctggtccacggggaagcccgggtcctccagggttaccaggtccttct
ggaccccctggacccttaggtccacccggtacaccaggagatccaggtgcatctggtcct
ccaggcttcaacggcccacctggcaggaaaggagaaactggatttgtaggacggcctggt
caaaagggcaaccctggcccacctggttcagatggtccacagggtccgcctggtattcca
gggtcagtgtcagcagcccatggcttcctcgttacccgacacagccagactgaagtagca
ccagactgtcctctgggaactagccccatctacgacggatattctctgttatacgtgcag
ggcaacgagagggcacacggccaggaccttggcacagccggcagctgtctgcgcagattc
agccccatgccttttatgttctgcaacatcaacaacgtctgcaactttgctgcccgtaac
gactactcctactggctgtccactccgaaacccatgcctatgtccatggaggctgtgact
ggggagaacatcaagccttacatcagcaggtgttctgtgtgtgaagctccagccatggtg
attgcagtccacagccagaccatccaggtccccctttgccctgcaaactggaatctcctg
tggattggttactccttcatgatgcacactagtgcaggcgctgagggctccggtcaggca
ctggcctcccccggttcctgcctggaggagttccgcagcacccccttcatagagtgccac
ggcagaggatcatgtaactacttcagcaactcctacagcttctggctggctacagtggag
ctttctgacatgttcaggaagccccagtcagagactttaaaggcgggtaacctgcataca
cgtgtcagccgctgtgtggtgtgcatgaagagaacgtaa
DBGET
integrated database retrieval system
