Girardinichthys multiradiatus (darkedged splitfin): 124882394
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Entry
124882394 CDS
T08099
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124882394 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmu03021
]
124882394 (cpsf3)
03019 Messenger RNA biogenesis [BR:
gmu03019
]
124882394 (cpsf3)
Transcription machinery [BR:
gmu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124882394 (cpsf3)
Messenger RNA biogenesis [BR:
gmu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124882394 (cpsf3)
U7-dependent histone pre-mRNA processing factors
124882394 (cpsf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
124882394
NCBI-ProteinID:
XP_047244703
LinkDB
All DBs
Position
15:2957793..2967255
Genome browser
AA seq
686 aa
AA seq
DB search
MAAKRKADVTVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEDSMEKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAMNDKI
RKAINVNNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDRRNGVI
IAGYCVEGTLAKHIMTEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLTFRGEKLAKVMGVLADK
KCAQGQRVSGILVKRHFNYHIMTPSDLSNYTDLSVGNVTQTQAIPFTGPISLLVSQLKNL
AGDVQQVEKAEKITVKIFESITLVHEAGMVLLEWVANPLNDMYADAVTTVVLEVQSNPNA
QKFLDSRKEIFDMEVFVERLELMLHDMFGDDCVDFKDSRNLCVTVDGATATVDPETRAVT
CLDDEPLREMIEVAIHRLFEALTPAF
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggcggctaagcgtaaagcggacgtgacggttcctgcggaggagagcgaccagcttctg
atccgtcctctaggagccggtcaggaggttggacgatcctgcatcatcctggagttcaaa
ggcaggaaaatcatgctggactgtgggatccatcccggtctggaaggaatggacgctctg
ccctacatcgacctgatcgatccagctgagatcgacctgctgctcatcagccacttccac
ctggaccactgtggagcacttccctggttcctgcagaagaccagctttaaaggacgcacc
ttcatgacgcacgccaccaaggccatctaccgctggctgctgtcggactacgtcaaagtc
agtaacatctcggcggacgacatgctgtacactgagacggacctggaggacagcatggag
aagatcgagaccatcaacttccacgaggtgaaggaggtggcgggcatcaagttctggtgt
taccacgccggccacgtcctgggagccgccatgttcatgatcgagatcgccggtgtcaag
ctgctttatacaggagacttctcccggcaggaggacaggcacctgatggctgcagagatc
cccagcgtgaagccagatatcctcatcacagagtcgacgtacggcacccacatccatgag
aagcgtgaggagagggaggcccgcttctgcaacacagtgcacgacatcgtgaacagggag
ggccgctgtctgatccccgtgtttgctttgggacgagctcaggagctgctgctcatcctg
gatgagtactggcagaaccacccggagctccacgacattcccatctactatgcctcatct
ctggccaggaagtgcatggccgtctaccagacctacatcaacgccatgaacgacaagatt
cgcaaggccatcaacgtcaacaaccccttcgtcttcaagcacatcagcaacctgaagagc
atggatcacttcgacgacatcggccccagcgtggtgatggcgtctcctggtatgatgcag
agcggcctttccagagagctgtttgagagctggtgcaccgacagacggaacggcgtcatc
atcgccggatactgtgtggagggaacgttggccaagcacatcatgactgaacctgaggag
atcgccaccatgtcgggtcagaagcttcctctgaagatgtctgtggactacatctccttc
tctgctcacactgactaccagcagaccagcgagttcatcagagccctcaaacctcctcac
gtgattctggtccacggcgagcagaacgagatggctcgactgaaggcagctctgatccgc
gagtacgaggacaacgatgaggtccacatcgaggtccacaacccgaggaacactgaggct
gtcacgctcaccttcagaggagagaagctggcaaaggtgatgggcgtgctcgcagacaag
aagtgtgctcagggtcagagggtctctgggatcctagtgaagaggcactttaactaccac
atcatgaccccatctgacctctccaactacacagatctgtccgtgggcaacgtgacccag
actcaggccatcccgttcaccggacccatctccctgctggtgagccagctgaagaacctg
gcaggtgacgttcagcaggtggagaaagcggagaaaatcacagtgaagatctttgaaagc
atcactctggttcatgaagccggcatggtgctgctggagtgggtcgccaacccgctcaat
gacatgtacgcagacgccgtcaccacagtggtcctggaggtccagtccaaccccaatgcc
cagaaattcctggacagcaggaaggagatcttcgacatggaggtgtttgtggagcgtctg
gagctcatgctgcacgacatgttcggagacgactgcgtggacttcaaagatagcagaaat
ttgtgcgtgacggtggacggagccacggcgacagtcgacccggagacgagagcggtgacg
tgtctggacgacgagcctctgagggagatgattgaggtcgccatccatcgtctcttcgag
gccctgacgcctgccttctga
DBGET
integrated database retrieval system
