Girardinichthys multiradiatus (darkedged splitfin): 124882512
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Entry
124882512 CDS
T08099
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu00100
Steroid biosynthesis
gmu01100
Metabolic pathways
Module
gmu_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
124882512 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
gmu01006
]
124882512 (fdft1)
Enzymes [BR:
gmu01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
124882512 (fdft1)
Prenyltransferases [BR:
gmu01006
]
Terpene biosynthesis
Squalene/phytoene synthase
124882512 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
HAUS4
Motif
Other DBs
NCBI-GeneID:
124882512
NCBI-ProteinID:
XP_047244897
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All DBs
Position
15:complement(18168847..18180685)
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AA seq
522 aa
AA seq
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MQISVCFQICGATSRPPKYFTTRSTLLRLSFTWIRGLKLPQAAWRPHGPCRLLTAGSGSS
RRGFRMAGACCKCPVSLSVLKRSFSVAPRGCGTAASRSLLQGWRRRGERGLQEAARPCSA
IRAAGFYRQTAFLCLSCQESMSDSLRSCYVYLNQTSRSFAAVIQALDGELRHAVCIFYLV
LRALDTVEDDMTIPLEKKVPMLNNFHTYLYQEEWCFTESHEKDRQVLEDFPTISLEFRNL
AEEYREVISDICHRMGVGMAEFLEKKVGSMKEWDQYCHYVAGLVGIGLSRLFSASQLEDP
EVGRDTELANSMGLFLQKTNIIRDYLEDTQEGRAFWPREAWSQFASRLEDLAQPEKLESA
LSCLNLLVTDALRHVPDVIAYLSRLRNQSVFNFCAIPQVMAIATLSTCYNNPMVFQGVVK
IRKGQAVTLMMEATNMRAVQTIIAQYSQEILKKVSLTDPSRDKTLHILALIQEKSNLPQP
SLSSRSHHLSPMYLSAAMLLAALSWQYLSTTAAQAQGTGDMQ
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgcagatatcagtctgcttccagatctgcggagcgacctcacgccctccaaaatatttt
acaacacgctcgacccttctccgcttgtcctttacatggattcggggtttgaaacttccc
caagcagcgtggcgtccacatggaccgtgtcgtctcctaactgcaggctcaggctcttcc
cgtcggggttttcgcatggccggagcctgctgcaagtgtccggtctctctgtctgtgtta
aagcgctccttctcggtggcgccgcggggctgcggcaccgctgcttctcggtcgctcctg
cagggctggaggaggcgcggggagaggggcctgcaggaggccgccagaccctgtagcgcc
atcagagctgcaggcttctatcgacaaacagcctttctttgtctctcctgccaggagtcc
atgagcgacagcctgcggagctgctacgtgtatctgaaccagaccagccggagctttgcg
gccgtgattcaggcgctggacggagagctgagacatgcagtttgcatcttctacctggtg
cttcgtgcactggacacagttgaggacgacatgaccatccctctggagaagaaggtgccc
atgcttaacaatttccacacgtacctgtaccaggaggagtggtgcttcaccgagagtcat
gagaaggatcgtcaagttttggaggatttccctacgatatcactggaatttagaaacctt
gctgaggaatacagagaggtcatctcggatatctgccaccggatgggagttgggatggct
gaatttttggagaagaaggtgggatccatgaaggaatgggaccagtactgccactacgtt
gccggtctcgttggcatcggtctgtcacggctcttctccgcctcccagctggaggatcca
gaagtgggacgggacacggagctggcaaactcaatgggcctgttcctccagaaaaccaac
atcatccgagactatctggaagatacgcaggagggacgggccttctggccaagagaggca
tggagccagtttgcaagtcgtctcgaagatctggcgcagcccgagaagctagagtcggct
ctgtcctgcctcaacctgctcgtcaccgatgctctgcgtcacgtccccgacgtcatcgcc
tacctgtcccggctgcgcaaccaaagcgtcttcaatttctgtgccattccacaagtgatg
gcaatagctaccctttcgacgtgctacaacaacccgatggtgtttcagggtgtggtgaag
atccgaaagggacaggctgtcaccctcatgatggaagccaccaacatgagagctgtgcag
accatcatcgcccagtacagccaggagattttaaaaaaggtctccctcaccgatccgtca
cgggacaagacactgcacatcctggctttaatccaagagaaatccaaccttccgcaaccc
agcctgagctccaggagccaccacctgtctcctatgtacctgtctgctgccatgctgcta
gctgctctaagctggcagtatctcagtactacagctgcccaggcgcagggcacgggagac
atgcagtga
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