Girardinichthys multiradiatus (darkedged splitfin): 124882729
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Entry
124882729 CDS
T08099
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gmu04121
]
124882729 (pdzrn4)
Enzymes [BR:
gmu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124882729 (pdzrn4)
Ubiquitin system [BR:
gmu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
124882729 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
124882729
NCBI-ProteinID:
XP_047245199
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All DBs
Position
17:14073177..14119247
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AA seq
819 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGRDFSKVEHDESVVETIRRDPIVVQVLRRTPTRAT
IVQRNGGSSQDVCVVDVCTQTDITFEHIMALAKLQPATPPVPEVCPFLLSDSCQSIHTME
HEFFECPEYLSNGPAEVERTEEYEFEEVELCRVHSQDKLGLTLCYRTDDEEDTGIYVSLV
EPNSIAARDGRIKEGDRILQINGFEVQDREKAVALLSSEEAKSITLVVTRPEIQLEEEAV
WLDDEQQQLVEELKMEILEERRKQREQSFEMADKLQGDEDMTTDTATYSSNNQDSGFGRS
TDSPEDQPLLARLYRRSPAHSLRDRWQSQNSHNRRGTAVPQEAQSTRMHSTSQGNESVVS
IRNGGCGVRGLENCFQQLLELKCQIRNGGECGVYSIRHSIECSVTGQDGGDGDSECDVGA
GVGVERELKMLNEELRSIELECQSIMQAHQLRQSQQLEQSQSALCSPGMNIKNGQKRHGR
LADIHEYPERSDSDRVREKDSSSAYNTAESARSTPLGMERSPDHSLQRQISITNQKNLRL
ASAAQSYPIPIPNPEGTHRPCRPADQSPVIPSSPDQSNPSRSESDPALPADDERSDKKGR
NRDSRRALPYGASYQTSTYHGQGGSKQLQSYMQLLQQHSSLEYSQSQLSLLSVCRDPMLH
SGRAGEPRLEWKVKVRADGTRYVARRPVRDRILRERALRIREERSGGMTTDDDAMSEMKM
GRYWSKEERKQHLARAREQRKRREFMQKSRIECLKEGPVSGAEGRKEINILELSHKKMMK
KRNKKILDNWMTIQELMSHGARVPEGSKVHNAFLSVTTV
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatttgtgcaccttgcagaaacgagaggaacactacaaactgctctacgag
attgcacaggtgaatgggcgtgacttctccaaggttgaacatgatgaatcagtggtggag
accatcaggcgggaccccattgttgtccaggtcctccggcgaacccccaccagagccact
attgtgcaaaggaatggcggctcttcacaggatgtctgtgtggtcgatgtttgcacacaa
acagacatcaccttcgagcacatcatggcgctggccaagctccagccagccaccccgcca
gtgccagaggtctgtccattccttctctcagacagctgtcaatccatccacaccatggaa
catgagttttttgaatgtccagagtacctgtctaatggtccagcagaggtggagaggact
gaggagtatgagtttgaggaagtggagctctgtcgtgtgcacagccaggacaagctcggt
ctgacactgtgttaccggaccgacgatgaggaggacactggcatttatgtcagcctggtg
gagccgaacagcatagcagcaagagatggacgcatcaaggaaggagatcgcattctgcag
ataaacggctttgaagtgcaagaccgggagaaagctgttgctttgttgtcaagcgaagaa
gcaaagagcatcacacttgtggtgacaaggccagagatccagctagaggaggaggctgtg
tggctggatgatgagcaacagcaacttgttgaggagttgaagatggagattctcgaggag
aggaggaagcagagagaacaaagctttgagatggcagataagcttcaaggtgatgaggac
atgacaacagacacagccacctattcttccaacaatcaagacagtgggtttgggcgcagc
acagacagtcctgaggaccagcctttattggcaagactttataggaggagcccagcacac
agcctaagggatcgatggcagtcacaaaactcccacaacaggcgagggactgctgtgcca
caggaagcccagagcacaagaatgcattcaacaagccaaggcaatgaaagtgtagtgagt
attcgcaatggtggatgtggagtccgtggtttagagaattgcttccagcaactcttggag
cttaagtgccaaatccgtaacggaggtgaatgtggggtgtactccattcgacacagtata
gaatgtagtgtcactgggcaagatggaggggatggagatagtgaatgtgatgttggtgca
ggggttggggtagagcgagagttaaagatgctgaatgaagagctgcgtagcattgaatta
gaatgccagagcatcatgcaagcccaccaactacgccagtcccaacagcttgagcaatca
cagtctgcactatgttcaccaggaatgaacattaaaaatggacaaaagcggcatgggagg
ctggctgacattcacgaatacccagaaaggtctgacagcgatagagttcgtgagaaggac
agctccagtgcctacaacacagcagaaagtgctcggtcaactccactaggcatggagcga
tcccctgatcattccctgcagagacagatcagcatcaccaaccagaaaaacctcagactg
gcctctgctgcacagtcctatcccattcctatccccaatcctgaaggcacacatagacct
tgtaggccagcagatcaaagtccagttatccccagcagccctgaccagagcaatccttca
cggtctgagtcggacccagcattaccagcggatgatgaaagaagtgacaaaaagggaagg
aacagggactcaaggagagctcttccctatggtgcttcatatcagacaagcacctatcat
ggccagggaggatccaaacaacttcagagctacatgcagctgctgcagcagcactcatcc
ctagagtactcgcaaagccagctgagcctcctcagtgtctgtcgagatcctatgctccat
agtggccgtgcaggagaacctcgtttggagtggaaagtcaaagttcgtgcagatggaacg
cgttatgtcgcacggaggcctgttcgtgaccgcattctgagggagcgggcgcttagaatc
agagaagagaggagtggaggcatgaccacagatgacgatgcgatgagtgagatgaagatg
ggccgctactggagcaaggaggagaggaaacagcatttggcaagggccagggagcaaaga
aagaggagggagttcatgcagaaaagccgcattgaatgcctaaaggaaggaccggtgagc
ggagctgagggcagaaaggagatcaacatcttggagctcagccacaaaaagatgatgaaa
aaacgaaacaaaaagattctggacaactggatgaccatccaagagctgatgagccacggg
gccagggtgccggaggggtctaaagtccataatgcctttctttctgtcaccactgtttaa
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