Girardinichthys multiradiatus (darkedged splitfin): 124883072
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Entry
124883072 CDS
T08099
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03013
Nucleocytoplasmic transport
gmu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124883072 (upf2)
03015 mRNA surveillance pathway
124883072 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmu03019
]
124883072 (upf2)
Messenger RNA biogenesis [BR:
gmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124883072 (upf2)
mRNA cycle factors
P-body specific factors
124883072 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
124883072
NCBI-ProteinID:
XP_047245910
LinkDB
All DBs
Position
17:complement(27961721..27979553)
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AA seq
1310 aa
AA seq
DB search
MSGMPAESKPSVNMDEKDVTSFSNKEKEKDREAERKLASARDKAKEEAKASSKKDAGKEE
KRKRLEEEKKKKEEKERKKKEEEKQKAEEDQKKKEEEEKKQQEELQRKLQEDEAKRQREE
EAALLKEKEEGHQLHQEAWERHHGRKELRSKNQNAHESRPEEAFFSRLDSSLKKNTAFVK
KLRTLTEQQRDALSNDFASLNLSKYIGEAVSSLVEAKLKISDAGCAVHLCSLFHQRYAEF
APLLLQAWKKHFEARKEDKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIG
TDRETHTHVSVVISFCKHCGDDIAGLIPRKVKLAAEKFCLTFPPSEIISTEKQQPFQNLL
REYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSL
ADLLDENMPELPQNKTVQEEHGPGIDIFTPGKPGEYELEGGIWEDEDARNFYENMIDLKA
FIPAILFKDNEKSSLSKDKEDTKDGREGKDVSTTEDLELELEALDIADEPLELEGGDEVE
NEELAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKS
NRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQIN
IETKNKTVRFIGELSKFKMFSKTDTLHCLKMLLSDFTHHQIEMACTLLETCGRFLFRSPD
SNLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPIEKAVKKKRPPLHEYIRKLL
YKDLSKVTTEKVLRQMRKLPWQDPEVKGYLICCMINIWNVKYNSIHCVANLLAGLVAYQE
DVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVVFRALFSFISF
GVNQDGSPSPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYIWWKKSV
DVWTKDHPFPIDIDYMISDTLELLRPKMRLSCSLDEATKHVADLEREVLVKLGMAMEKDG
RSSAMSEGEPLDEEDEDEDDEGAADTEEQSGNESEMNEQEEDEGSENEEEEREEEEEENT
DYLTDSNKENETDEENSEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEVVKVH
QLDVAIPLQLKSQLKKGGSGQQCMGEGDSDISDTMQFVMLTRKGNKQQYKILNVPLSSHL
AANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSFAQRPAPANTNRERRPRYQH
PKGAPNADLIFKTGGSREKRARFEKHDVRGRQRERDREAKQQRQQEPAVE
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtatgcctgctgagagcaagccctcagtaaacatggatgaaaaagacgttacc
tccttcagcaacaaggaaaaggagaaggacagagaggccgaaaggaagctggcatctgct
cgagacaaagccaaagaggaggcgaaagcaagcagcaaaaaggatgccggcaaggaagag
aagagaaagcgcttagaggaggaaaaaaagaagaaagaggaaaaggagcgaaagaagaaa
gaggaggaaaagcagaaagcggaggaggatcagaagaaaaaagaggaggaggagaagaag
cagcaggaggagctgcagaggaagcttcaagaggatgaggccaaacgacagcgtgaggag
gaggcagcgctcctcaaagaaaaggaggagggacatcagttgcaccaggaggcctgggaa
cgccatcatggcaggaaggaactccgcagcaagaaccagaacgcccatgagagccggcct
gaggaggccttcttcagccggttggactccagccttaagaagaacaccgcctttgtcaag
aagcttcgcacgctgactgaacagcagcgggatgcgctctctaatgactttgcctccctc
aatctcagcaagtacattggtgaggcagtaagctccctggtggaggccaagctgaagatc
tctgacgctggctgtgcggtgcacctgtgctccctcttccaccagcgctacgcagagttt
gctccgttactgctgcaggcgtggaagaagcactttgaagccaggaaggaggacaaggca
cctaacgtgagcaagctgcgcactgacctgcggtttatcgccgagctcaccattgttggc
ctcttcaccgataaggaaggcctctcgctgatttacgagcagctgaagaacatcatcggg
acggaccgagagacgcacacccacgtgtctgtggtgattagcttctgcaagcactgtggg
gacgacattgccggtctgataccccgcaaggtaaagctggcagcggagaagttctgcttg
actttccctccaagcgagatcatcagcacagagaaacagcagcccttccagaacctcctg
cgagagtacttcacatccctaaccaagcatctgaagaaagaccaccgtgagctgcagaac
atcgagaggcagaaccgtcggatcctccactccaaaggcgagctcagcgaggacaggcac
aagcagtatgaggagttcgccacatcataccagaagttgctggccaacactcagtctctg
gctgacctgctggatgaaaatatgccggagctgccgcagaacaagaccgtgcaggaagag
catggtcccggcatcgacatcttcacccctggcaaacctggggagtacgaactcgagggg
gggatctgggaggacgaagacgctcgcaacttctacgagaacatgatcgacctgaaggct
ttcattcctgccatcctcttcaaagacaacgagaagagcagcctgagcaaagacaaggag
gacaccaaagatggcagagaaggaaaagatgtgagtaccacagaagatctggagctagaa
cttgaagctctggacatcgcagatgagcctcttgagctggagggtggagacgaggtggag
aatgaggaactggccaaaaagttgctggacgagcaagaacaagaggatgaggaggccaac
acagggtcccacctgaagctgatcgtggacgcgttcatccagcagcttcctaactgtgtc
aacagagacctcatagacaaggctgccatggacttctgcatgaacatgaacaccaaatcc
aacaggaggaaactagtccgagccctgttcactgtccccaggcagaggttggatcttctg
cctttctactcacgcctggtggcaactctgcatccctgcatgtcggacgtggccgaggat
ctctgctccatgctgaagggagacttcaggttccatatccgtaagaaagaccagatcaac
atcgagacaaaaaacaaaacggtgcgattcatcggggagctttccaagttcaagatgttc
tcaaagaccgacactcttcactgtctgaagatgctgctgtctgatttcactcatcaccaa
atcgagatggcctgcactctgctggagacctgcggccgcttcctgttcaggtcgccggat
tctaacctgcggaccagcgtcctgctggaacaaatgatgcgtaaaaagcaggcgcaacac
ctggacgcccgctacgtgaccatggtggagaacgcctactactactgcaacccaccaccc
attgagaaggccgtgaagaagaagaggccgccgctgcacgagtacatccgcaagctgctc
tacaaggacctgtccaaagtcaccacagagaaagtgctgaggcagatgcgcaagctgccg
tggcaggaccccgaggtcaagggctacctgatctgctgcatgatcaacatctggaacgtc
aagtacaacagcatccactgtgtggccaacctgctggccggcctggtggcctaccaggag
gacgtgggtatccatgtggtggacggagtcttggaggacatccggcttggcatggaggtc
aaccagcccaagttcaaccagcggcgcatcagcagcgccaagttcctgggcgagctctac
aactaccgaatggtggagtctgcagtcgtcttccgcgctctcttctccttcatctctttc
ggggtgaaccaggatggcagccccagtcctctggaccccccagagcacctgtttcgcatc
cgtctggtctgcaccctgctcgatacctgcggtcagtactttgatcgcggctccagcaag
aagaagctcgactgtttcctcatctatttccagaggtacatttggtggaaaaaaagcgtg
gatgtttggacgaaggaccacccgttccccatcgacatcgactacatgatcagcgacacc
ttggagctgctcagaccaaaaatgaggcttagctgctccctggatgaggccaccaagcac
gtcgccgacctggagagggaagtgctcgtcaaactgggcatggccatggagaaggacggt
cgctccagcgccatgagcgaaggggagcctctcgatgaggaagacgaagatgaggatgac
gagggagccgctgacaccgaggagcagtcagggaacgagagcgagatgaacgaacaggaa
gaggatgaaggatctgagaatgaggaagaggagagggaggaagaggaggaggagaacaca
gattatctgaccgactccaataaagagaacgagacagacgaggagaacagtgaggtcacc
atccgtggtggtggactgaaacatgtggcctgtgctgaggatgaagacttcattcaggct
ctggataagatgatgctggagaacctgcagcagcgtagcggcgaggtggtgaaggtgcac
cagctggacgtggccattcctctgcagctgaagagtcagctgaagaagggcggatccgga
cagcagtgcatgggagagggagactcggacatctccgacaccatgcagttcgtcatgctc
actcgcaaaggaaacaagcagcagtataagatcctgaatgtccccctgtcgtcccacctg
gcggcgaaccacttcaaccagcagcaggccgagcaggaggagcgcatgaggatgaagaaa
ctcactctggacatcaacgagaggcaggagcaggaggactatcaggagatgatgcagtcc
tttgcccagcgtccggctccagccaacaccaaccgggagcgccggccccgctaccaacac
ccgaaaggcgctcccaacgccgacctcatcttcaaaactggaggaagcagagagaaaagg
gcgagatttgaaaagcatgatgtccgaggcaggcagagggagagagacagggaagccaag
cagcagagacagcaggaacctgctgtggaataa
DBGET
integrated database retrieval system
