Girardinichthys multiradiatus (darkedged splitfin): 124883566
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Entry
124883566 CDS
T08099
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03030
DNA replication
gmu03420
Nucleotide excision repair
gmu03430
Mismatch repair
gmu03440
Homologous recombination
gmu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124883566 (rpa1)
03420 Nucleotide excision repair
124883566 (rpa1)
03430 Mismatch repair
124883566 (rpa1)
03440 Homologous recombination
124883566 (rpa1)
03460 Fanconi anemia pathway
124883566 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gmu03000
]
124883566 (rpa1)
03032 DNA replication proteins [BR:
gmu03032
]
124883566 (rpa1)
03400 DNA repair and recombination proteins [BR:
gmu03400
]
124883566 (rpa1)
Transcription factors [BR:
gmu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
124883566 (rpa1)
DNA replication proteins [BR:
gmu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
124883566 (rpa1)
DNA repair and recombination proteins [BR:
gmu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
124883566 (rpa1)
MMR (mismatch excision repair)
124883566 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
124883566 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Pox_vIL-18BP
RADX
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
124883566
NCBI-ProteinID:
XP_047246679
LinkDB
All DBs
Position
18:35494588..35528013
Genome browser
AA seq
598 aa
AA seq
DB search
MANLSAGAIEALANGSGWNEAVLQLVNIRKIDGGSGPSRFRVMMSDGQHTLSSFMLSTQL
NYMAEKNILVPNCVCVLKRQVTNMLKDGRRVVIILEIEVIKPAEEVAGKIGDPTPYSDGQ
SKGQQPAPVPESRPPLQQQNRNEVTRNLKRDFIKMAPSALPDTPGGSSKVVPIASLNPYQ
SKWTIRARVTNKSSIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFFSLIEVGKV
YYISKGSLKIANKQYTSVKNDYEMTLNGESTIIPCEDNCDVPMVQCDFVSIGDLENRDKD
AIVDVIGVCKSVDEVTRLTTKSNREVSKRTLSLMDMSGKLVTVTLWGEEAETFEGSGQPI
VAIKGAKLSDFGGRSLSASFSSTMMINPDIPEAYKLRGWFDKEGHAMEGQSLTEVRGGRL
MENWKTLADVKSEHLGHGDKADYYSCIATIVFLRKENCLYQACPSQDCNKKVVDQQNGMF
RCEKCDKEFPNFKYRLILSANIADYADNQWVTCFQESAEAILGQNAAYLGQLKDSNESAF
DEIFQQANFNTFIFRNRVKLETYNDESRIKATVMDVKPVDHREYSKRLIVNIRKMGAK
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatctctcagcgggcgcgattgaggctttagcaaatggcagcggttggaacgaa
gcagtgcttcagttggtgaacattcgcaagatcgatggaggaagtgggccctctcgcttt
agggtgatgatgagcgatggacaacacacactgtcatccttcatgctctctactcagcta
aactacatggccgagaagaacatcctggtcccaaactgtgtgtgtgtcctcaagaggcag
gtgacgaatatgctcaaagatggacgacgagtggtaatcattttagaaattgaagtcatc
aagcctgctgaagaggttgctggtaaaataggagaccctactccttattctgatggtcag
agtaaaggccagcagccagcaccagtccctgaaagcagaccacctctgcagcaacaaaat
agaaatgaagtgaccagaaatttaaaaagagactttataaagatggctccttccgctttg
cctgatactccaggggggagctccaaagttgtgcccatcgccagtctcaacccctaccag
tccaagtggacgatccgcgctcgtgtaaccaacaagagctcaattcgtacatggagcaac
tctcgtggtgatggaaaactcttctctatggagattgtagatgagagtggagagatcaga
gtgacgggctttaaccaagaagttgacaagttcttctctctgatcgaggttggcaaggtc
tactatatctccaagggctccctgaagatcgcaaacaagcagtacacatcagtgaagaat
gactatgaaatgactctcaatggagagtccaccatcattccctgcgaggacaactgtgat
gttcccatggtgcagtgtgactttgtctccattggcgacttggaaaacagagacaaagat
gctattgttgacgtaattggagtgtgcaagagcgtggacgaggtgacccggctgacaacc
aagtctaaccgtgaagtatccaagagaacattgagtctgatggacatgtctgggaagttg
gtgacggtcacactgtggggagaggaggcagaaacgttcgaaggctctggacagccgatt
gtagccatcaagggggcaaagctctcagactttggaggccgttcactttctgcatccttc
agcagcaccatgatgattaacccagatattccagaggcatacaagctcagaggctggttt
gacaaggaaggacatgccatggagggacagtccctgacggaggtgagaggcggaagactc
atggaaaactggaagactttggctgatgtgaagtcggagcacctgggacacggtgacaag
gctgactactactcctgcatagccaccatcgtatttctgcgcaaggagaactgcctttat
caggcctgcccaagccaggactgcaacaaaaaagtggttgaccagcagaatggcatgttc
cgctgtgagaagtgcgataaagagtttcccaacttcaagtaccgcctcattctatctgcc
aacattgcggattacgccgacaaccagtgggtaacttgcttccaggagagtgcagaggcc
attctgggccagaatgcagcttacttgggccagctcaaggactcgaatgaatcagctttt
gatgagatcttccagcaagcaaacttcaacacttttatcttccgcaacagagtgaagctg
gaaacgtataacgacgaatccaggattaaggccacagtgatggacgtgaaacctgtcgac
cacagagagtacagcaagaggctaatcgtgaacatacggaaaatgggcgccaagtag
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