Girardinichthys multiradiatus (darkedged splitfin): 124884225
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Entry
124884225 CDS
T08099
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124884225 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmu03041
]
124884225 (prpf8)
Spliceosome [BR:
gmu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
124884225 (prpf8)
Complex C
U5 SnRNP specific factors
124884225 (prpf8)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
124884225
NCBI-ProteinID:
XP_047247967
LinkDB
All DBs
Position
18:complement(26198067..26215935)
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AA seq
2358 aa
AA seq
DB search
MAAAFPYRGVPPGMPPGVPPGVPPVVPPGLPPGVPPVVPPPAPVPDYMSEEKLQEKARKW
QQLQAKRYAEKRKFGFVDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPH
AVLKLLENMPMPWEQIRDVPVLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRD
RRHFKRMRFPPFDDEEPPLDYADNILDVEPLEAIQMELDTEEDSSVVEWLYEHQPLKDNP
KFVNGTTYRRWQFTLPMMSTLYRLANQLLTDLVDYNYFYLFDLKAFFTSKALNMAIPGGP
KFEPLVRDINLQDEDWNEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNV
VFIKTEDPDLPAFYFDPLINPISHRHSVKSQEPLPDDDEEFELPEFVEPFLKETPLYTDN
TANGIALLWAPRPFNLRSGRTRRAIDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLN
ALKHRPPKAQKKRYLFRSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLH
LDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADG
LQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLVYYRFNTGPVGKGPGCGFWASGWRVW
LFFMRGITPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMM
PEGIKQNKARTILQHLSESWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYN
RERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWL
ESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEA
LSRIKRHLLTQRAFKEVGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFP
PWIKPADTEPPPLLVYKWCQGINNLQDVWETSEGECNVMLESRYEKMYEKIDLTLLNRLL
RLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHR
ASEMAGPPQMPNDFLSFQDTTTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEH
PDPNNENIVGYNNKKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSV
YSKDNPNLLFNMCGFECRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESM
QRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQT
RIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGM
SHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIP
RINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQA
LGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLW
WSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVF
DQELDALEIETVQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTT
QKYWIDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGN
WFPGSKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQII
WFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLA
KWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACL
KVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPD
KTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEIS
APSQQRQQIAEIEKQTKEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRA
ISAANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNP
QVKEIRCIVMVPQWGTHQTVHLPNQLPSHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHA
KIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYE
RVQMLLSDRFLAFFMVPGQVSWNYNFMGVRHDPNMKYDLQLSNPKEFYHEVHRPSHFLNF
ASLQEGEIYNADREDMFS
NT seq
7077 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcctttccctacagaggagtccctccagggatgccaccaggtgttcctcct
ggtgtacctccagttgttcccccaggtcttccaccaggggtcccccctgttgtcccccct
cctgcgcctgttccagactacatgtctgaggagaaactacaggaaaaagcaaggaaatgg
cagcagttgcaggctaaacgctatgcagagaagaggaagtttggttttgtggatgctcag
aaggaagacatgcctcctgaacacgtccgcaagatcataagggaccatggagacatgacc
aatagaaagtttcgtcacgacaaaagagtctacctaggtgccctgaagtacatgcctcac
gcagtgctgaagcttctggaaaacatgccgatgccctgggagcagatcagagatgtgcct
gtgctctaccacatcactggagccatttcctttgtgaatgaaatcccttgggtcatagag
cctgtctacatcgctcagtggggaaccatgtggatcatgatgcgtcgtgagaagcgtgac
aggagacacttcaaaaggatgcgctttccaccgtttgacgacgaggagccgccactggac
tacgctgacaacatcctggatgtggaacctctggaggccattcagatggagcttgatact
gaggaagattcttcagttgtggagtggctgtatgagcaccagcccctcaaagacaatccc
aagtttgtgaatggcaccacttaccgtcgctggcagttcacactccccatgatgtcgacg
ctgtatcgtctggccaatcagcttttaacagatctggtggactataattacttttatctg
tttgacctgaaggcgttcttcacttcaaaagccttgaacatggccattccaggaggacca
aagtttgagcccctggtcagagacatcaacctacaggatgaagactggaacgagttcaac
gacatcaacaaaatcatcatcaggcagcctatcaggaccgagtacaagattgctttcccc
tacctgtacaataacttgcctcaccatgtgcaccttacttggtaccatacacccaatgtg
gtatttatcaagaccgaggacccggatcttccagcgttctactttgatccgctgatcaac
cccatatctcacagacattctgtcaagagccaggagcctctccctgatgacgatgaggag
tttgaacttccagagtttgtggaaccgttcctgaaagagacacctctctacactgacaac
acggccaatggcatcgctctgctttgggccccgagaccctttaacctgcgctctggtcgc
acaaggcgtgccattgatatccccctggtcaaaaactggtaccgagagcattgccctgca
ggacagccggtgaaagtgcgcgtgtcgtaccagaaactgctgaagtactacgtgctcaat
gctctcaaacacagaccccccaaggctcagaagaagaggtatctgttccgctccttcaag
gcaaccaagttcttccagtccaccaagctggactgggtggaggtcggcctgcaggtctgc
agacagggatacaacatgcttaatctgcttattcaccgtaagaacctcaactacctacat
ctggactacaacttcaacctaaagcctgtcaaaacactcacaacaaaggaaagaaagaag
tccagattcggcaacgccttccatctgtgcagagaggtgctacgtctgagcaagctggtg
gtggacagccacgtccagtacaggctgggaaacgtggatgcttttcagctggctgacggg
ctgcagtacatttttgctcatgtgggacagctgacgggcatgtaccgctacaagtacaag
ctgatgagacaaatccgcatgtgcaaagacctgaaacacctcgtctactaccggttcaac
actgggcctgtgggcaagggaccaggctgtggcttctgggcttctggctggagagtgtgg
ctcttcttcatgcggggcatcactccactgttggagaggtggcttgggaatttgctggcc
aggcagtttgaaggacgtcattccaagggcgtggccaagaccgtgaccaaacagcgtgtg
gagtctcactttgacctggagttgcgtgctgcagtgatgcacgacatcctggatatgatg
cctgaaggaatcaaacagaacaaggccagaaccatccttcagcacctcagtgagtcttgg
aggtgctggaaagccaacatcccatggaaggtgcccggcctccccactcccattgagaac
atgatcctgcgatacgtgaaggccaaagctgactggtggaccaacacggctcactacaac
agagagagaattcgtcgcggagccactgtggacaaaaccgtgtgtaagaagaacctgggc
aggctgacccgtctatacctgaaagccgagcaggaaagacagcacaactatctgaaggat
ggaccctacatcactgcagaagaggccgttgccatttacaccaccactgtgcactggctg
gagagtcggcggttctctcccatacctttccccccactgtcttacaaacacgacaccaag
ctgctgatcctggctctggagaggctcaaagaggcatacagcgtgaagtctcgtctgaat
cagagtcagagggaggagcttggcctgatagagcaggcctatgacaaccctcacgaggcc
ctttctaggatcaaacgtcacctgctcacacagagagccttcaaagaggttggtatcgag
ttcatggacttgtacagccacctcgtgcctgtgtacgatgtggaacctttggagaagatc
actgacgcgtacctggaccagtacctgtggtacgaggcagacaagagacgtcttttccct
ccctggatcaaacctgctgacactgagcctccaccgcttctggtctacaagtggtgccaa
ggcatcaacaacttgcaggatgtgtgggaaacgtctgaaggcgagtgcaacgtgatgcta
gagtctcgctatgagaagatgtacgagaagatcgatctaaccttgctcaacagactgctg
cgtcttattgtggaccacaacattgccgactacatgacggccaagaataacgtggtgata
aactacaaggacatgaaccacaccaactcttacggcatcatcaggggactccagtttgcc
tcgttcattgttcagtactacggcctggtgatggacctgctggtgctcggtttgcatcgt
gccagcgagatggcagggcctccccagatgcccaatgacttcctgagtttccaggacacc
accaccgagtcggcccatcctatcaggctgtactgccgttacatcgaccgcattcacatc
ttcttcagattttctgctgatgaggcgagggacctgattcagcggtatctgacggagcac
ccagaccccaacaacgagaacatcgtgggatacaacaacaagaagtgctggcctcgtgat
gcccgcatgaggctgatgaagcacgatgtcaaccttggacgagcagtgttctgggacatc
aagaatcgcctgccgaggtccgtgaccacagtccagtgggagaacagctttgtgtcagtc
tacagcaaagacaaccccaacctactcttcaacatgtgtggctttgagtgccgcatcctc
cccaaatgccgcaccagctatgaagagttcactcacaaagatggcgtttggaacctgcag
aatgaggtcaccaaggaaaggacagcacagtgtttcctgcgtgtggacgatgaatccatg
caacgcttccacaacagagtgcgtcagattctcatggcttctggatccaccactttcacc
aagattgtgaacaaatggaacacggctctgatcggtctgatgacgtacttccgtgaagct
gtagtcaacacacaggagctcctggaccttcttgtaaaatgcgagaacaagatccagacc
cgtatcaagatcgggctgaactctaaaatgcctagccgtttccctcctgtggtcttctac
actcccaaagagttgggcggtcttggcatgttgtccatgggtcacgtgctcatcccacag
tctgacctacggtggtccaaacagacagatgtgggtatcacccacttcaggtctggaatg
agtcatgaagaagatcagctcattcctaacttgtaccggtacattcagccgtgggagagc
gagttcattgactctcagcgagtctgggccgagtatgccctcaagagacaggaggccatt
gcccagaacaggcgtctcactctggaggatttggaggactcctgggacagaggaatccct
cggatcaacacacttttccagaaggacagacacacactggcttatgacaaaggctggaga
gtcaggacagacttcaaacagtatcaggtgctgaagcagaatccgttctggtggacccac
cagaggcacgatggtaagctgtggaacctgaacaactaccgcacagacatgatccaggct
ctgggtggtgtggagggcatcctggagcacacgctctttaaaggcacttacttccccacc
tgggagggtctcttctgggaaaaggccagcggctttgaagagtcgatgaaatggaagaag
ctgacaaacgcccagaggtctggtctgaaccaaatcccgaaccgtcgcttcactctgtgg
tggtcacccaccatcaacagggccaacgtctacgtgggtttccaagtacagcttgacttg
acaggaatctttatgcacggcaagatccccacactgaagatctccctcattcagatcttc
agggctcacttgtggcagaagattcatgagagcatcgtcatggatctctgtcaggtgttt
gaccaggagcttgatgctctggagatcgaaactgtgcagaaggagaccatccaccccagg
aagtcctacaagatgaactcctcctgtgcagacatcctcctgtttgcgtcatacaagtgg
aacgtgtcgcgcccatccctgctcgctgactcaaaggatgtgatggacagcaccaccaca
cagaaatactggattgacattcagctccgatggggcgactacgactctcacgacattgag
cgctacgccagagccaaattcctggactataccacggacaacatgagtatctacccctcc
cccactggggtgctcattgctattgacctggcttacaacctgcacagcgcctatggtaac
tggttccccgggagcaagcctctgatccagcaggccatggccaagatcatgaaggccaac
ccggctctgtatgtgctccgagagcgcatccgcaagggtctgcagctatactcctcagag
cccactgagccttacctgtcctctcagaactacggcgaactgttctccaaccagatcatc
tggtttgtggatgacacaaatgtgtacagagtcactatccacaagacttttgaaggaaac
ttgaccacaaagcccatcaacggagccattttcatcttcaaccccaggacaggtcaacta
ttcctcaagatcatccacacatctgtgtgggctggacagaaacgtcttggccagctggcc
aaatggaaaacagctgaagaagttgctgccctgatccgctcccttcctgtggaggagcag
ccaaaacagatcattgtgaccaggaagggcatgctggaccctctggaggtccacttgctc
gacttccccaacatcgtgatcaagggctcggagttacagctgcccttccaggcttgtttg
aaggtggaaaagtttggagacctgatcctgaaggccacagagccacagatggtgctgttc
aacctctacgatgattggctgaagaccatttcatcttacactgccttctcccgtctaatc
ctgatcctaagggcgctccacgtcaacaacgaccgtgccaaggtgatcctgaaacctgac
aaaaccacaataactgagcctcatcacatctggcccacgctcactgatgaggagtggatc
aaggtggaagttcaacttaaggatctcattctggccgattatggcaaaaagaacaacgtg
aacgttgcctcactgacccagtctgagatccgtgacatcatcctgggtatggagatctca
gccccgtctcagcagcgtcagcagatcgctgagattgaaaaacagaccaaagagcagtca
cagctcacagccacacagacccgcaccgtcaacaaacatggagacgagatcatcacctcc
accacctccaattacgagacgcagaccttctcctctaagactgagtggagagtcagggcc
atatctgctgccaacctccatctccgaaccaaccacatctacgtgtcttctgatgacatc
aaggagacgggttacacatacatcctgcccaagaacgttctcaagaagttcatctgcatc
tccgatctgcgagcacagattgcaggctacctgtatggcaccagcccaccagacaacccc
caggtgaaggagatccgttgtatcgtcatggtaccacagtgggggacacatcagactgtc
cacctccccaaccagctgccttcccatgaataccttaaagaaatggagccccttggctgg
atccacacgcagccgaacgagtcgccacagctgtccccacaggacgtcacaacccacgct
aagatcatggctgataacccgtcatgggatggagagaagaccatcataatcacatgcagc
ttcacgcctggttcctgcacacttacagcctacaagctgacacccagtggctatgaatgg
ggtcgccagaacaccgataaaggcaacaaccctaaaggatacctgccatcccactatgaa
agagttcaaatgctgctttctgatcgcttcctggcctttttcatggttccaggccaagtc
tcctggaactacaatttcatgggtgtgcgccacgatcccaacatgaagtacgacctgcag
ctctccaaccccaaagagttctaccatgaagtccatcggccatcgcacttcttaaacttc
gcctcgctgcaggagggtgagatttacaacgccgaccgagaggacatgttcagctga
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integrated database retrieval system
