Girardinichthys multiradiatus (darkedged splitfin): 124884899
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Entry
124884899 CDS
T08099
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
gmu
Girardinichthys multiradiatus (darkedged splitfin)
Pathway
gmu03015
mRNA surveillance pathway
gmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124884899 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
124884899 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmu03019
]
124884899 (pabpc4)
03041 Spliceosome [BR:
gmu03041
]
124884899 (pabpc4)
Messenger RNA biogenesis [BR:
gmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124884899 (pabpc4)
mRNA cycle factors
Stress granule specific factors
124884899 (pabpc4)
Spliceosome [BR:
gmu03041
]
Complex C
Other components
Complex C specific factors
124884899 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RRM_5
RBD_DEAH11
RRM_10
RRM_7
RBD_RDR6
RRM_3
OB_RNB
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
124884899
NCBI-ProteinID:
XP_047248897
LinkDB
All DBs
Position
19:complement(18075796..18090727)
Genome browser
AA seq
624 aa
AA seq
DB search
MNTATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMNDERLKELFEKYGKTLSVKVMADSSGKSRGFGFVSFEK
HEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPTSGYFMPAVPQAQNRTT
YYAPNQLAQMRPNPRWQQQGGRGQGGFQGMSNSLRQPGPRANLRHMTPSSGAQGPRGAGQ
IMGPRQSMGVPRAMPPYKYATSVRNPNPQVVQPIALQQVQPAVHVQGQEPLTASMLAAAP
PQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVAVL
QAHQAKKDATQKVGGMANTAPATS
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccgcgacggggagttatccaatggcttctctctacgttggcgacctgcacccc
gacatcacggaggctatgctgtacgagaagttcagccccgccggaccggtactctctatt
cgggtctgcagagacatgatcacccggcgctctctcggatacgcttatgtgaacttctcg
cagcccgctgacgccgagagagccctggacaccatgaactttgacgtggtgaaagggaag
ccaatcaggatcatgtggtcccagagagacccctctctgaggaagtctggcgtgggcaac
gttttcatcaagaaccttgacaagtccattgacaacaaagccctgtatgacaccttctct
gcctttggaaacatcctctcctgcaaggttgtgtgtgatgaaaatggctcaaagggctac
gcgtttgtccacttcgagacgcaggacgcagcagatcgtgccattgagaagatgaatggc
atgctactgaatgaccgcaaggtgtttgtgggtcgtttcaaatctcgaaaagagcgggag
gctgaactcggtgccaaagccaaggagtttaccaatgtttacatcaaaaactttggtgat
gacatgaacgacgaacgactgaaagaactttttgaaaaatatggtaaaactctgagtgta
aaggtgatggcggactcctctggcaaatctagggggttcgggtttgttagttttgagaaa
cacgaggatgcaaacaaggctgtggaggaaatgaatggcaccgagctgaatggtaagacc
gtttttgtgggccgagctcagaagaagatggagcgacaagcagagctgaagaggaagttt
gagcagctcaaacaagaaagaatcagtcgatatcagggagttaatctttacatcaagaac
ctcgacgatacaatcgacgatgaaaaattgcgtaaggagttttctccatttggttcgatt
acaagtgccaaggtgatgttagaagaaggccgttcaaaaggctttggcttcgtctgcttc
tcttcccccgaagaggccaccaaggctgtgacagagatgaacggacgtatcattggctcc
aaacctctgtacgtcgctctcgctcagcgcaaagaggagcgcaaagcccacctcaccaac
cagtacatgcagcgaatagcgggcatgagggccatgccggccaatgccatcatcaatcag
ttccagcccaccagcggctacttcatgcccgccgtgcctcaggcccagaacaggaccaca
tactatgcaccaaaccagctggctcagatgcgacccaacccacggtggcagcagcaaggt
ggtagaggtcaaggaggtttccaaggaatgtcaaactcgcttcgacagcctggaccccgt
gccaaccttagacacatgactcctagcagtggcgcacagggcccacgaggtgctggtcag
atcatgggtcctcgtcagtcaatgggagtccccagggccatgcctccttataaatatgcc
accagtgtccgtaaccccaatccccaagtggtgcaacctattgctttacagcaggttcag
ccagctgtgcacgttcagggccaggagcctctcacagcctccatgctggctgctgcacct
cctcaggagcagaagcagatgttaggagagcgtctgttcccgctgattcaggccatgcat
gccaacctggcgggaaagatcaccggcatgctgctggaaatcgacaactctgagctactg
cacatgctggagtcgcatgaatctctccgttcaaaggtggaggaagctgtcgcagtgctg
caggcccaccaagcgaagaaggatgccacccagaaagtaggcggcatggcaaacactgcc
cctgctacatcctaa
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