KEGG   Glycine max (soybean): 100306359
Entry
100306359         CDS       T01710                                 
Name
(RefSeq) sm-like protein LSM5 isoform X2
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
gmx  Glycine max (soybean)
Pathway
gmx03018  RNA degradation
gmx03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gmx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100306359
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100306359
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gmx03019]
    100306359
   03041 Spliceosome [BR:gmx03041]
    100306359
Messenger RNA biogenesis [BR:gmx03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100306359
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100306359
Spliceosome [BR:gmx03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    100306359
SSDB
Motif
Pfam: LSM DUF7452 Ntox4
Other DBs
NCBI-GeneID: 100306359
NCBI-ProteinID: XP_003531086
UniProt: C6SZ20
LinkDB
Position
8:complement(6271467..6273446)
AA seq 87 aa
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RITKLDQILLNGNNIAILVPGGSPESE
NT seq 264 nt   +upstreamnt  +downstreamnt
atggccaacaatccgtcacagcttctcccatcagagttgattgaccggtgtataggttcg
aaaatttgggtgataatgaagggtgacaaggagcttgttggtactcttagaggctttgat
gtttatgtcaacatggtccttgaagatgttactgaatatgagatcactgctgaagggaga
cggataaccaagcttgatcagattttactcaatggaaacaacattgccattttggtccct
ggtggttctcctgagtcagaatga

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