Glycine max (soybean): 100776413
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Entry
100776413 CDS
T01710
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
gmx
Glycine max (soybean)
Pathway
gmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100776413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100776413
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100776413
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100776413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
100776413
NCBI-ProteinID:
XP_003543494
UniProt:
K7M3A4
LinkDB
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Position
13:41959374..41966924
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AA seq
628 aa
AA seq
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MSSLLNSSLNGSASNLPDGAGRSFATSFSGQSGVASPVFHHSGSIQGLHNIHGSFNVPNM
PSTLTSRNSTINSVRTGGGVQQPSASLSSGRFASNNLPVALSQLSHGGSHGHSGVNNRGG
LGVSPILGNAGPRITSSMGNMVGGGNIGRISPGGLSVPGLASRLNLSGNAGSGGLGVQGQ
NRLMSGVLPQGSPQVISMLGNSYPSAGGSLSQSHVQTVNNLNSMGMLNDVNSGDSTPFDI
NDFPQLTNRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNSDF
AMDMYQKEQLHDNTMSMMQSQHFSQMGRTAGFSLGGLYPSHRTQQQQQHAPSVSSNGVSF
SSVNNQDLLHLHGTDIFPSSHSTYHSQTSGPPGIGLRPLNSPNTVSGMGSYDQLIQQYQQ
HQNQSQFRLQQMSSANQSFRDQGMKSMQTAQSNPDPFGALGLFSVVHISDPNLKYLAHGI
DLTTLGLNLNSTENLYKTFRSPWSDEPAKGDPEFSVLQCYYAKQSPSLHQGYFSKFSVET
LFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRLWFIRVPNMEPLVKTNTYERGSYHCFD
PNTFETVRKDNFVLHYEVVEKRPSVPQH
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcttacttaattcttctctgaacgggtctgcttctaatcttccagatggtgct
gggcgatcctttgctacgtctttctctggtcagtctggtgtagcctccccagtttttcat
cactctggttctattcagggattgcacaacattcatgggagctttaatgtacccaatatg
cccagtacacttacgtcaagaaactcaacaataaatagcgttcgaactgggggaggagtt
caacaaccttcggcaagcctttcaagtggaagatttgcatctaataatctaccggttgct
ctgtcacagctatctcatggaggctcccatggacattcaggagtcaacaatagaggagga
ttgggagtatccccaattttgggaaatgcaggtcctcgtatcacaagttccatgggaaac
atggttggtggagggaacattgggaggataagccctggaggattgtctgttccaggtctt
gcttctcgtctaaatttaagtggaaatgctggatctggtggtttaggtgtgcaaggacag
aatcgattgatgagtggtgtgcttccacaaggatctccacaggtaatttcaatgctagga
aattcctatcctagtgctggaggttcgctttcacaaagtcatgttcaaacagtaaataac
ttgaactctatgggaatgctgaatgatgtgaattctggtgacagtacaccttttgacatc
aatgacttccctcaactgacaaatcgtcctagttctgctggtgggcctcaaggacagttg
ggttctttacgaaaacagggtcttggagttagtcccattgtccaacaaaaccaagagttt
agtattcaaaatgaagacttcccagctttaccaggattcaaaggtggtaattcagatttt
gctatggatatgtaccagaaagaacaacttcatgataataccatgtcaatgatgcaatct
caacatttctcccagatggggaggactgctggtttcagtttgggaggattatatccatca
catcgtacacaacagcaacagcagcatgccccttctgtcagtagcaatggtgtctccttt
tcatctgtaaacaatcaagatcttctccatctgcatggaacggatatttttccatcttca
cactcaacatatcattcccagaccagtggacctcctggcattggactaaggcctctgaat
tctccgaatacggtttctggtatgggttcatatgaccagcttatccagcagtatcaacag
caccagaaccagtcccagttccgccttcagcagatgtcatctgcaaatcagtcttttagg
gatcagggcatgaagtctatgcaaactgctcaatctaatccagatccatttggtgcactg
ggcttgttcagtgtagtccatataagtgatcctaacctgaaatatcttgctcatgggatt
gatcttacaacacttgggttgaatttgaattcaacagaaaacctttacaagacttttcgg
tctccgtggtctgatgaaccggccaagggtgatccagagttcagtgtgctacaatgttat
tatgctaaacagtctccttcccttcatcaaggttatttttcaaagttttcagtggaaact
ttattttacatattttacagcatgcccaaagatgaagcacaactatatgcggcaaatgaa
ctttacaaacgtggttggttttatcataaagagcatcgtttatggtttataagagttccc
aacatggagccgcttgtcaaaacaaacacatacgagagaggatcttaccactgttttgat
ccaaacacttttgaaactgtccggaaggataattttgttcttcattatgaagtggtggaa
aagagaccttctgtgcctcaacattga
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