Glycine max (soybean): 100779021
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Entry
100779021 CDS
T01710
Symbol
TIR1C
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1C
KO
K14485
transport inhibitor response 1
Organism
gmx
Glycine max (soybean)
Pathway
gmx04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
100779021 (TIR1C)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gmx04121
]
100779021 (TIR1C)
Ubiquitin system [BR:
gmx04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
100779021 (TIR1C)
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_NXF1-5
F-box
Motif
Other DBs
NCBI-GeneID:
100779021
NCBI-ProteinID:
NP_001345174
UniProt:
I1NB13
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Position
19:46747785..46751594
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AA seq
587 aa
AA seq
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MQRMAYTFSFPEEVLEHVFSFIWNERDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPL
MVVKRFPEVRSIALKGKPHFADFNLVPDGWGGYVCPWIAAMARAFPCLEEIRLKRMVITD
ESLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEEDLSGHWLSH
FPDSYTSLVSLNISCLNNEVSLSALERLLGRCPNLRTLRLNRAVPLDRLPNLLLQCPQLV
ELGTGVYSTEMRPEVFSNLEAAFSGCKQLKSLSGFWDVLPSYLPAVYPICSRLTSLNLSY
AIIQSSDLIKLISQCPNLLRLWVLDYIEDAGLYALAASCKDLRELRVFPSDPFGLEPNVA
LTEQGLVSVSEGCPKLQSVLYFCRQMSNAALHTIARNRTNLTRFRLCIIEPRTPDYLTHE
PLDSGFGAIVEQCKDLQRLSLSGLLTDRVFEYIGTCGKKLEMLSVAFAGDSDLGLHHVLS
GCDNLRKLEIRDCPFGDKALLANAEKLETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVI
DERGPPDSRPDDCPVEKLYIYRTIAGPRLDMPGFVWTMEDDSSLRLE
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgcagagaatggcgtacacgttttcgtttccggaggaggtgctggagcacgtgttctcg
ttcatatggaacgagagggacaggaacgcgatctcgctggtgtgtaagtcatggtacgag
atcgagaggtggtgcaggaggaaggtgttcgtggggaactgctacgcggtgagccctctg
atggtggtcaagcggttcccggaggtgagatccattgcgctcaaagggaagccgcacttt
gcggacttcaatttggtccccgatggctggggaggttacgtctgcccctggatcgccgcc
atggctcgcgccttcccctgcctcgaagaaatcaggctcaagaggatggtcatcaccgac
gagagcttggaactcatcgctaagtccttcaagaacttcaaggtcttggttctcacttcc
tgtgagggttttaccactgatggacttgccgccattgctgccaactgcaggaatttgagg
gaattggacttgcaagagagtgaagtggaggaggaccttagtgggcactggctaagccat
tttcctgattcctatacgtcattagtttcacttaacatctcttgcttaaacaatgaggtg
agtttatctgcgctagagcgtctgcttgggaggtgtcccaacctgcggaccctccgtctc
aatcgtgccgtgccccttgatagactacccaacctacttctccagtgtcctcagctggtt
gagttaggcacaggagtctactcaactgagatgcgaccagaggtcttctcaaacctggaa
gcagcattttctggctgcaagcagttgaagagcttgtctggcttttgggatgtgctccca
tcctaccttccagctgtctaccccatctgctcaaggctaacatcgctaaacttgagttat
gctattattcaaagctctgatcttattaagcttatcagtcaatgcccaaatttgttgcga
ttatgggtgctggattacatagaagatgctggtctttatgcccttgctgcatcatgtaag
gatctaagagagttaagggtgtttccttctgacccatttggtttagaaccaaatgttgca
ttgacagaacagggccttgtctctgtgtctgaaggttgccccaagctccaatcagttcta
tatttttgtcgtcaaatgtcgaatgcagccctacatacaattgcgcggaacaggactaat
ttgactcgttttcggctttgtattattgagcctcggactcctgactatctaacccatgaa
cccctggattctggttttggggctattgtagagcaatgcaaggatcttcaacgcctatcc
ctatctggtcttcttactgaccgtgttttcgagtatatcgggacttgtggtaagaagctg
gagatgctatctgtggcttttgctggagatagtgatttgggacttcatcatgtgctatca
gggtgtgataatcttaggaagctggagatcagggactgcccctttggtgacaaggccctt
ttggcaaatgctgaaaagctggagacaatgcgatccctttggatgtcctcctgctcggtg
agttatggagcatgtaagctactgggtcagaaaatgccaagactcaacgttgaagtcatt
gatgaaagaggacctccagattcaaggccagatgattgtccagttgagaagctttatata
tacaggactattgccgggccaaggttggacatgcctggttttgtgtggacaatggaagat
gattcttcactaaggcttgagtga
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