Glycine max (soybean): 100779096
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Entry
100779096 CDS
T01710
Name
(RefSeq) protein PAT1 homolog isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
gmx
Glycine max (soybean)
Pathway
gmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100779096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100779096
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100779096
mRNA degradation factors
5'-3' decay
Decapping complex
100779096
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Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
100779096
NCBI-ProteinID:
XP_006597997
UniProt:
K7MCV1
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Position
15:complement(35442711..35450931)
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AA seq
881 aa
AA seq
DB search
MDEFGAAAPNTEDHKQFGHAFKEGVFDASQYAFFGKDVAEEVELRGLEDEDDYKAMPAAE
FKEEDFLLNKEEAVDVRSLSDIDDLTTTFLKLNKAVSGPRSPGVIGERGSRENFTDSSAS
EWSQRDDIPYWFDQHAYDPEGQGFQDGKRWSSHPHSSLTQLHDSRPLYRTSSYPEQQRQL
QHQLQHCSSEPVSNWFDQHFNDSETTEDGKRWSSQPHSSIAHLQESKPLYRTSSYPDKRQ
ELTRFSSEPILVPKSSFTSYPPPGGRSQQSSPNHSTGRLNIPFHAGGDHMALPSQNHSHL
FNSALQLSGSKHESLFSGKVGQFTAGSHLNYQMQNPWVNQSGLYSGDHPNLLSNMLQQQL
HHRSGSLSPHLLTQLQQQQHRLHHPILQSGSYMSGFQSHLINPQLSSGSSMVSKYEHMLG
LADVREPRPKSTHKGKQSHRVFQQGSDASSQKNESGSLHFRSKYMTSDEIESILKMQLAV
THCNDPYVDDYYHLACLSKKTGAKLKKSFCPTQIKELPSRARSNTDSHGFLQVDALGRVS
FLAIRRPHALLEVDPSNSGISERNISEKALEQEPLFAARVTIEDGLCLVLDVEDIDRFLQ
CNQLQDGGTQLRRRRKVLLEGLATSLQLVDPLGKNGHKVGFGAKDDVVFLRLVSIAKGRK
LLAKYLQLLVPGSELMRIVCMAIFRHLRLLFGGLPSDPAAAETTSDLAKVVCQCVLGMDL
GALGACLAAVVCSSEQPPLRPLGSTAGDGASRILVSVLERATELLTDPHGAGSYVGNRSF
WQASFDEFFGLLTMYCMNKYQSIMQSLLVQGMENVSVIGSDAAKAISREMPVELLRASLP
HTNDHQRKLLLDFGQRSVPVVGFNSYTGSSSGHVNSETVLS
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtttggtgccgctgctccgaacactgaagatcacaaacaattcggacacgct
ttcaaagaaggtgtatttgatgcatcacaatatgcattctttggtaaagatgttgctgag
gaagttgagttgagggggttagaagatgaagatgactataaggctatgcctgctgctgag
ttcaaggaggaagatttcttactcaataaagaagaggcagtggatgtaagatctctttcc
gatattgatgatctcactaccacttttttaaagttgaacaaggctgttagtggaccaaga
agtccaggagttattggtgaacggggatcaagagaaaattttacagattcctctgcttct
gaatggtcacaaagggatgacattccctactggtttgatcagcatgcttacgaccctgaa
gggcaaggctttcaggatggaaaaagatggtcatcacatccccattcttctctaactcag
ctacatgactcaaggcccttgtacagaacatcttcatatcctgagcagcaacgacagctg
caacaccaacttcaacattgctctagtgaacctgtttcaaactggtttgatcagcatttt
aatgatagtgaaactactgaggatggaaagagatggtcatcacagccacattcctccatt
gcccacttacaagaatcaaagcccttgtatagaacatcatcatatcctgacaagcgacag
gagcttactcgtttttctagtgaacctattttggtaccaaaatcttcatttacttcctat
cctccccctggtggtaggtcccaacagtcttctccaaatcacagtacaggtcgtttgaac
attccctttcatgctggaggagatcacatggctttgccgtctcaaaatcattctcatttg
ttcaattctgctctacagttgagtggatcgaaacatgagtcactttttagtggaaaggtg
ggtcaatttactgccggctcccatctaaattatcaaatgcagaatccctgggtcaaccaa
tcagggttgtattctggagatcatccaaacctcctcagtaatatgttgcagcaacaatta
caccatcgtagtggatcattatcacctcatttgttgacccaattgcagcaacagcagcat
agattgcatcatcccattctgcaatcaggaagctacatgtcaggtttccaatcccattta
attaaccctcaactttcttctggatcatccatggttagcaaatatgaacatatgcttggt
cttgctgatgttagagaacccagaccaaaatcaactcataagggtaaacagagtcatcgt
gtctttcaacagggttccgatgcaagtagccagaagaatgaaagtggttcattacacttt
aggtccaagtatatgactagtgatgaaattgagagtattcttaaaatgcagctagctgtg
actcattgtaatgatccctatgttgatgactattatcacctagcttgtctttctaaaaaa
actggtgctaagttgaaaaaatcattttgcccaacccaaataaaggaacttccttctcga
gcccgctccaatacagactctcatggttttcttcaggtggatgctttagggagggtttca
ttcctggctattcgccggcctcatgctctgcttgaagttgatccgtcaaacagtggtatc
tctgagcgaaatatttctgagaaggcccttgagcaggagcctctgtttgcagccagagtg
acaattgaggatggtctatgtcttgttcttgatgtagaggatattgatcgttttctacag
tgtaatcaactgcaagatggtggaactcaattaagacgaagacggaaggtccttttggaa
ggactagcaacatcactccaacttgttgacccactgggaaagaatggacacaaagttggg
tttggtgctaaggatgatgttgttttcttacgattagtatctatagccaaagggcgtaaa
ctcctagcaaagtatcttcagttacttgttcctggtagtgagcttatgcggatagtctgc
atggccattttccgtcatttgagactcttatttggtggtctgccctctgatccagcagct
gcagagactacaagtgaccttgctaaggttgtttgtcagtgtgtcctaggaatggatctt
ggtgccctaggtgcttgtcttgcagcagtggtttgttcgtctgagcagcctcctctacgt
ccccttggaagcaccgctggggacggtgcctcccgtattttagtatctgtccttgagagg
gccactgaacttcttaccgatccccatggtgctgggagctatgtaggtaatcgttcgttt
tggcaggcctcatttgatgaattttttggccttctcacaatgtattgcatgaataaatat
cagagtatcatgcaatcattgcttgtacaagggatggaaaatgtgtctgtaattggatca
gatgctgctaaagcaatcagtagggaaatgcctgttgaactcttgcgagcaagtcttcct
cacaccaatgatcaccagaggaaattactactagattttggtcagcgctctgtgcctgtg
gttggatttaacagttatactgggagcagtagtggtcatgtgaactcagagactgtgcta
agttga
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