Glycine max (soybean): 100779296
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Entry
100779296 CDS
T01710
Symbol
HDA1
Name
(RefSeq) histone deacetylase 19 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03082
ATP-dependent chromatin remodeling
gmx03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100779296 (HDA1)
03083 Polycomb repressive complex
100779296 (HDA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gmx03036
]
100779296 (HDA1)
Enzymes [BR:
gmx01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
100779296 (HDA1)
Chromosome and associated proteins [BR:
gmx03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
100779296 (HDA1)
HDAC complexes
Sin3A-HDAC complex
100779296 (HDA1)
BRAF-HDAC complex
100779296 (HDA1)
REST complex
100779296 (HDA1)
SHIP complex
100779296 (HDA1)
MiDAC complex
100779296 (HDA1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
100779296 (HDA1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
100779296 (HDA1)
Chromatin remodeling factors
NuRD complex
100779296 (HDA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
100779296
NCBI-ProteinID:
XP_003517607
UniProt:
I1JB12
LinkDB
All DBs
Position
1:complement(57839954..57848008)
Genome browser
AA seq
497 aa
AA seq
DB search
MESGGNSLPSGSDGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQ
VLKPMAAKDRDLCKFHADDYVAFLRGITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGALKLNHGVCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKIHERVLY
VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYAKGKYYSLNVPLDDGI
DDESYQSLFKPIMGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFN
VPLLLLGGGGYTIRNVARCWCFETSVALGIELDDKMPQHEYYEYFGPDYTLHVAPSNMEN
KNSRQLLDEIRAKLLDNLSRLQHAPSVPFQERPPDAELLERDEDQDDRDERWDPDSDREV
GDDSNPVRRRVKSECVDAEDKDTESYHKHLDCGRDYLTPFKEISCSKVSGVDSMAVDEPC
IKEEQDNLKELSDHRPR
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtggagggaactcccttccatcagggtcagatggtgtgaagagaaaggtttca
tatttctatgatccagaggttggaaactattattatgggcagggacacccaatgaaacca
cacaggattcgaatgacacatgctcttttagcccactatggattgcttcaacacatgcag
gttctgaagcctatggctgctaaagatagggacctttgcaagttccatgctgatgattat
gtggcctttctgagaggcatcacccctgaaacgcagcaagatcaattgagacagctgaag
aggtttaatgttggcgaagactgccctgtatttgatggtctttactctttctgccagaca
tatgcaggaggttctgttggtggtgctctaaagttgaaccatggagtatgtgatattgca
ataaattgggctggtggtctacatcatgcaaagaagtgtgaggcttctgggttttgctat
gttaatgacattgtgctggctattttggaacttctcaaaatacatgagcgtgttctgtat
gtggacattgatatccaccatggtgatggtgtagaggaggccttttacaccaccgatagg
gtcatgactgtttcgtttcataagtttggggattactttcctggaacaggtgatattcgt
gatattggatatgctaaagggaaatattattcactaaatgttcccttggatgatggaatt
gatgatgagagctatcagtccttgtttaagccaataatgggaaaggttatggagattttt
aggcccggtgctgttgtattacaatgtggtgctgactctttatctggggacaggttaggt
tgtttcaatctttccataaaaggtcatgcagagtgtgtcagatatatgagatcttttaat
gttccccttctattgctcgggggaggtggctatacaataagaaatgtggcacgttgttgg
tgtttcgagactagcgttgctcttgggattgaactagatgataagatgcctcaacatgaa
tattatgaatattttggtcctgactatactcttcatgttgctccaagtaacatggaaaac
aagaactcccgacaattattggatgaaataagagcaaaacttcttgataatttatctagg
cttcaacatgcaccaagtgtcccattccaggaacggccacctgatgcagagcttctagag
agagatgaagatcaagatgatagagatgaaagatgggatcccgattctgacagggaggtt
ggcgatgacagcaatcctgttcgcagaagggtgaaaagtgaatgcgttgatgctgaggat
aaagatacagaaagttatcataaacatctagattgtggaagagattatcttacgcctttc
aaggagatttcatgctccaaggtgtcgggggtggactcaatggcagtggatgaaccatgc
atcaaagaggagcaggataatttaaaagagctttctgatcacaggccaagatga
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