Glycine max (soybean): 100779360
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Entry
100779360 CDS
T01710
Name
(RefSeq) uncharacterized protein LOC100779360 isoform X3
KO
K06100
symplekin
Organism
gmx
Glycine max (soybean)
Pathway
gmx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100779360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmx03021
]
100779360
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100779360
Transcription machinery [BR:
gmx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100779360
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
100779360
U7-dependent histone pre-mRNA processing factors
100779360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
Motif
Other DBs
NCBI-GeneID:
100779360
NCBI-ProteinID:
XP_006576525
LinkDB
All DBs
Position
3:complement(8209045..8224796)
Genome browser
AA seq
1358 aa
AA seq
DB search
MVGKTMSMAATSREKLASLVNAAKLAIDIPSKLESLRQLRHELPPEDPVLLTEFLPSLFL
FHSDRFGPVRKFLTEMLGEIGLKNTEFLSNIVPVLIDLLDDDTPAVVRQVLLCGTDLFRA
TLEKIVVQGLYSSDLDGALESAWAWMLKFKDKVYSIAFQHGSGGAKLLALKFVEAVIRLY
TPDPNGSSEPTSHQGRPVEFNILWLRRGHPVLNIGDLKIEASHRLGLLLDQLRFPTVKSL
SNSVIIVLIKSLSAIAFDRPAFYGRILPVLLSLEPSSSVVNGVCVSATHFALKNAFVTCS
KCTHPSAAPWRDRLAEALKEMQSEGKADRVFHLISASNGTIEREKDDQPVIKEEEPATNS
GDSVQNNLARKRSGSQIGGDLAEDEETPGKRVRTTVVALEEPKELDECTTTYSQDETPTV
PTSSKGDVDNGPVRQLVATFGALIAQGERAVGHLEILISSISADLLAEVVMANMKNLPLN
YPNAEGNDEQLQDISMIGSDDKAKYPPSFVAAVMSLSSTFPPIASLLDAHQSVSNEVKSQ
VEEEISATAANSGAVDSGMNIESENIPSPIDFPSSDASIPGVENGCTTMPPDIHDVGNSE
SGIPGLDSFGRSDSVSQTSAPSLLVSTEICLEDGSQEQDTSLDQRSPLNVAPSISTDRSE
ELSPKAAVRDVNSLVSSTATSVVPPRLVLPKMIAPVVDLEDEQKDHLQKSCFMRIIDAYK
QIAVAGGTNIRFSILAYLGVEFPLELDPWKLLQKHILIDYISHEGHELTLRVLYRLFGEA
EEEPDFFSSTTAASVYENFLLTVAEALRDSFPPSDKSLSKLLGESPYLPKSVLKILENMC
SPGNGDKGEKELHSLNADRVTQGLSTVWSLILLRPPIRDTCLQIALQSAVHHLEEVRMKA
IRLVANKLYPLSSISKQIEDFAKEMLFSVMSGDASEATDIECSIADSEKGPDVEKVPNEQ
SSLSGSTKDVTSDNRQSCTSESVSPDSVSEAQRCMSLYFALCTKKHSLFRQIFVIYRSTS
KAVKQAVHRQIPILVRTMGSSSDLLEIISDPPNGSENLLMQVLQTLTDGTIPSKDLICTV
KRLHDSKLKDAEFLIPILPFLSNDEVMPIFSHIVNLPLEKFQAALGRILQGSSQSGPVLT
PAEVLIAIHGIDPEKDGIALKKVTDACNACFEQRQTFTQEVLARVLNQLVEQIPPPLLFM
RTVLQAIGAFPTLVDFIMGILSRLVTKQIWKYPKLWVGFLKCVQLTKPQSFGILLQLPPA
QLENALNRIAALKAPLIAHASQPDIQSKLPRAVLVVLGLASDSQVSSQAQTSQTQTSQTQ
TSQTQTTQTQTSQTQTGETSSSDKDTATEKSKESSTAS
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggtcggaaaaacaatgtccatggcggcgacttcccgcgaaaagctggcgagtctcgtg
aacgccgccaagctggccatcgacatcccttcgaagctagaatcgctgcgccaactccgc
cacgaacttccccccgaagaccccgttctcctcaccgagttcctcccctcgctcttcctc
ttccactccgatcgcttcggccccgttcgcaaattcctcaccgagatgcttggggagatt
ggattgaagaacacagagttcttgtccaacattgtgcctgtgcttattgatttattggat
gacgacacgccggcggttgttcgccaagttctactgtgcggaactgacttgtttcgcgcc
actcttgagaaaattgtggttcagggtctatactctagtgatttagatggtgcccttgaa
tctgcttgggcatggatgcttaaattcaaagacaaagtgtactcaatagcttttcaacat
ggaagtggtggcgcaaagctgctggcactgaagtttgttgaggcagttattcgtctttac
acacctgatcccaatggttcctcagagcccacttctcatcaaggaaggcctgtggaattt
aatatattatggctcaggcggggtcatcctgtacttaacattggagatttgaaaattgaa
gccagccatcgtttgggtctcttgcttgatcaactcagatttccaactgtgaagtccctt
agtaactcagtaatcattgtgctgattaaaagtctatcagccattgcatttgacaggcct
gcattctatggccgcatcttgccagttttgctcagtttggaaccttccagctctgttgtt
aatggggtctgtgtatcagctacacattttgctttgaagaatgcctttgttacttgctcg
aaatgtacacatccaagtgctgctccgtggagagatcgtttggcagaggccttgaaggaa
atgcagtcagaaggaaaggcagatcgggtgttccacctaatctctgctagtaatggaacc
atagagagagagaaagatgatcaacctgttatcaaggaagaggaacctgcaacaaattct
ggcgattcagtgcagaataatttggcaagaaaacgatcaggatcacaaattggaggtgat
ttagctgaagatgaagaaactcctggaaaacgggtcaggacaactgttgttgctttggaa
gagcctaaggagttagatgaatgtaccactacctactctcaggatgagactccaactgta
ccaacatcttcaaaaggagatgtggataatgggcctgtacggcaacttgttgccacattt
ggtgctttgattgctcaaggtgaaagagctgttggacatttggaaattctcatctcaagt
atttctgctgacttgctagctgaggtggtgatggcaaatatgaaaaacctacctctgaat
taccctaatgctgaaggaaatgatgaacagctgcaagacattagtatgattggttctgat
gacaaggctaaatatccaccatcatttgtagctgctgttatgtcactttctagtactttc
ccgccaatagcttcccttcttgatgcgcatcaatcagtgtccaatgaggtaaagtcacaa
gtggaggaagaaatttctgcaactgctgcaaatagtggtgctgtggattctggcatgaat
attgaatctgaaaatataccatcgcctattgattttccatcttctgatgccagtatacct
ggagtagagaatggctgcacaactatgcctcctgacatccatgatgttggaaactcagag
agtggaatccctggcctagattcttttggtcgtagtgattctgtgtcacaaacttctgct
ccttccttattggtttccactgaaatatgcctagaagatggcagtcaagagcaggataca
agtttggatcagaggtcacctctgaacgtagctccatcaatatcaacagataggtctgag
gagctgagcccaaaagcggctgttagagatgtcaatagcttggtgtcctcaacagctact
tcagttgtgcctccccgattagtcttgccaaagatgattgctcctgttgttgaccttgaa
gatgaacaaaaggatcatttgcaaaagtcatgttttatgcgtattattgatgcatataag
caaatagctgtagctggaggcaccaacattcgtttttcgatacttgcttatttaggagtt
gagtttcccttggaattagacccgtggaaactattacagaagcatattttgattgattac
attagtcatgagggacatgagttgacattgcgtgtcctctacagattatttggtgaggct
gaagaggagcctgacttcttttcttccacaacagcagcttctgtatatgaaaatttcctc
cttacagtggcagaagcacttagagattcctttccaccttcagataaatcattaagtaaa
ttgcttggtgaatctccttatttaccaaaatcagttctgaaaattttagaaaacatgtgt
tctcctggaaatggggataaaggtgaaaaggagttgcactcactgaatgcagatagagtt
actcaaggtctaagtactgtatggagtttgattcttctaaggcctcccattcgagatact
tgcttacaaattgctctacagagtgcagtgcatcatctggaagaagtgcgtatgaaggcg
atacgtctggtggcaaataagctttatcctttgtcatccatttctaagcaaatagaagat
tttgcaaaggaaatgcttttctcagtgatgagtggggatgcatctgaagctactgatatt
gaatgttccattgctgattcagaaaagggacctgatgttgagaaggttccaaacgaacaa
tcatcattgagtggcagcactaaagatgtcacctcagataatcgtcaatcatgcacatct
gagagtgtctcaccagattcagtttctgaggctcagaggtgcatgtcattgtattttgct
ttgtgtacaaagaaacattctctctttcgccaaatatttgtcatctatagaagtacatca
aaggcagtgaagcaggcagtacatcgccaaattccaatactagtacgtactatgggctca
tcttcagatctccttgaaattatttcagatcccccaaatggaagcgagaatcttctaatg
caggtattgcaaacacttacagatggtacgatcccttctaaggatttaatatgtactgtg
aaaaggttgcatgattcaaaactcaaggatgcagagtttcttattccgatattaccattc
ctatcaaatgatgaggtaatgcccattttttctcacattgtgaatcttcctttagagaag
ttccaagcggcacttgggcgcatattacagggatcatcacaatcaggtccagttcttact
ccggctgaagttttaattgcaattcatggaattgatcctgaaaaggacggaattgccttg
aaaaaggtcacagacgcatgcaatgcttgctttgagcagcggcaaacttttactcaagaa
gttcttgccagagttttgaatcagttggttgagcagattcctcctcctttactgttcatg
cgtactgtattacaagcaattggtgcttttccaacactggtggactttataatggggatt
ctttctcgccttgtgacaaagcagatatggaaataccctaagttgtgggtgggattcttg
aagtgtgtgcagttgacaaaaccacagtcatttggcattttgcttcagctgcctccagca
caattggaaaatgcattaaatagaattgcagccttgaaggcaccattgattgcgcatgca
agccagccagatatacaatctaaacttccgagggctgtgctggttgttctgggacttgct
tccgattctcaggtttcaagtcaagcacaaactagtcagacacaaactagtcagacacag
actagtcaaacacagactactcagacacaaactagtcaaacacagactggtgagacaagc
agctcagacaaggacacagcgacagaaaaatcaaaggaatcgtctacagccagctaa
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