Glycine max (soybean): 100779830
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Entry
100779830 CDS
T01710
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
gmx
Glycine max (soybean)
Pathway
gmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100779830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100779830
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
100779830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_8
TPR_14
TPR_16
TPR_19
TPR_17
TPR_9
TPR_CcmH_CycH
TPR_12
ARM_TT21_C
TPR_7
BTAD
TPR_15
Sel1
Motif
Other DBs
NCBI-GeneID:
100779830
NCBI-ProteinID:
XP_006573916
LinkDB
All DBs
Position
1:57855380..57869981
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AA seq
1181 aa
AA seq
DB search
MDSRTDIEEEGAEHLFRRLQDSSDDASIHFDIGVFLWEKGGEAKEKAAQHFILSAKLNPK
NGDCFKYLGHYYGGVSLDTQRAIKCYQRAVVLNPDDSESGEALCNLLDQGGKESLEVVVC
REASEMSPRAFWAFRRLGFLQVHQKKWSEAVLSLQHALRGYPTCADLWEALGLAYQRLGR
FTAAIKSYGRAIELDDTMVFALVESGNISVTLGSFSKGVEQFRQALEISPRCVPAQYGLA
LGLLGLAKDCINLGAYQWGASLLEEASEVARASAYFLRNISCIWKLHADIQLAYARCYPW
IEDVQELEANKEAFSASIISWRRTCFLAAKHARFSYQRASHLSPWQANIYADIAVISDLI
TSLDKNYKQDINACRQLAEKMSMGALLLEGDSYEFWLALGCLSDHNALNQHALIRALQLN
VSLAVAWGYLGKLYRKVDEKQLARQMFDRARSIDPGLALPWASMSFESCVGRELESDEAF
ESCSRAVQIMPLAEFQLGLTKLALLSGHLSSSQVFGAIQQAVQLSPHYPESHNLHGLVCE
ARNDYKSASTFYRLARHAINIGSRSIHNSHIREISINLARSLSKAGNAADALQECEHLKK
EGALDDEGLQVYGFSLWQLGENDLALSVARSLAATLSSMQKTSVATSICFICRLVYYIRG
LDAAITSIVKMPKELFQSSKVSFVMTAINALDRQNRLGFVVSSSRYFLKYHEEIAGMHLL
IALSKLVKNESDCCLDIQSGVAHLKKALHMFPNCSLIRNLLGYLMVSSKELNNCHVATRC
CKLDHLDLSDQKGFKSASDIHGAGAVACYTTGNSIPKFTFPTCTKQCSNHPGAIRHLQKC
FHQKPWNHDSRYLLVLNYLQRAREQRFPHHLCRILNRLTHAALSNDLYSRTEMLYRYRYF
QLLLCASEISLQCGNHMTCITHAKKASELVLPDDYLFFAHLLLCRVYAMKGDHLSFQKEY
IRCLELKTDYHIGWICLKLMECQYELQIDSNTIDLNFEECVKRSGKLCNMWMAVYNLVRG
MISLQKRDLVSAEDFMAQACSLAGFESCLFLCHGAICMELVRQCHGSQFLSRAINSLTKV
HEHSLIPLPFVSVLVAQAEGSHGSKERWNRNLRLEWYNWPPEMRPAELYFQMHMLARQLK
VGPNASIESTQSPHRWVIRAIHMNPSCMRYWRILQKLMEET
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggactcacgtacagacatagaggaagaaggggcggaacatctcttccgacgcttgcag
gattcctcagatgacgcctcgatacattttgatattggcgtgttcttgtgggaaaaagga
ggagaagcgaaggaaaaagctgctcaacattttattctatcggccaaattaaaccctaag
aatggagactgcttcaaatatctgggccattattatggcggcgtttcccttgatactcag
agagctattaagtgttaccaacgagctgttgttctcaatcccgatgattccgagtctggg
gaagcgctgtgcaatttacttgaccaaggcggaaaggagagtttggaggtggtggtatgc
cgggaagcttctgaaatgtcaccgagggctttctgggctttccgaagattgggtttcctg
caggttcatcaaaagaaatggtctgaagctgttctgagtcttcaacatgctcttagaggc
tatcctacatgtgctgatttgtgggaagctttgggccttgcttatcagcgactgggcagg
tttactgcagctataaagtcttatggccgtgcaattgagttggatgatacaatggtcttt
gctttggtggaaagtggaaatatctctgtgactcttggttcatttagcaagggagttgaa
caatttcgacaagctttggagatttcaccacggtgtgtgcctgcacaatatggacttgct
ttggggctgcttggtttggcaaaagattgcattaacctaggagcatatcaatggggggct
tcactgttagaggaagcatctgaggttgcaagggcaagtgcttattttttaagaaatatc
tcatgtatttggaaactacatgctgatattcagcttgcatatgctagatgctatccttgg
attgaggatgtccaagaattggaagctaataaggaagctttcagtgcttctatcatttct
tggaggaggacctgctttttggctgcaaaacatgcaaggttttcatatcaacgagcgtcg
cacttgtctccctggcaagcaaacatctatgctgatattgctgtgatttcagatcttatc
acgtcattggacaaaaattacaagcaagacataaatgcatgcaggcaattggcagagaag
atgtctatgggagccttgctacttgaaggtgatagttatgagttctggctggcattgggg
tgtttgtctgatcataatgcactaaatcaacatgctttgatcagagcattgcaattgaat
gtatctctagctgttgcttggggatatcttgggaagctgtatcgtaaagtggatgaaaag
caattggcaaggcaaatgtttgatcgtgctagaagtattgatcctggccttgcattgcca
tgggcaagcatgtcatttgagtcttgtgtgggtagggagcttgaatcagatgaggcattt
gagagctgttcacgggctgtgcagataatgcctttagctgaattccaacttgggctcact
aagcttgctttgttgagtggacatctctcatcttctcaggtttttggagctattcagcag
gctgtgcagctttctcctcactatcctgaatcccataatttacatgggctggtttgtgag
gctcgaaatgattataagtctgcttctactttttataggttagcacgtcatgcaattaac
attggctcacggagtattcacaactcacatatcagggaaatatcaatcaatttggccaga
tccctttctaaggcagggaatgctgctgatgctttgcaggaatgtgaacatttgaagaaa
gaaggggcacttgatgatgaaggcttacaagtatatggtttctcattgtggcaacttggt
gaaaatgatttggctctctctgtagctagaagtctcgctgcaactctttcttctatgcaa
aagacatctgtggcaacatctatatgtttcatttgtagattagtatactacatacgtgga
ctggatgcagccatcacaagcattgtgaaaatgccaaaggaactatttcaaagttcaaaa
gttagttttgttatgacagctatcaatgctcttgatagacaaaatcgtcttggatttgtt
gtctcaagtagccgatattttctcaagtatcatgaagaaattgctgggatgcacctttta
atagcactaagtaaactggtgaaaaatgagtctgattgctgccttgacattcagagtgga
gttgctcacctcaaaaaagctctgcacatgttccctaactgtagtttgataaggaacctt
cttggctacctcatggtatccagtaaggagttaaacaattgtcatgtggcaacaaggtgt
tgtaaacttgaccatcttgatctttccgatcaaaaaggtttcaaatcagcttctgatatt
catggtgcaggagcagttgcttgctataccactggcaacagcattccaaagttcaccttt
ccaacatgtacaaagcagtgttctaatcatcccggagctatcagacacctgcagaagtgc
tttcatcagaaaccatggaatcatgattcccgctacttgcttgttcttaactatcttcag
agggcacgtgagcaaagatttcctcatcatctttgtcgcatactaaatcgtctaactcat
gctgctctttcaaatgatttgtatagtaggacagaaatgttgtatcgatatagatacttc
caacttctactttgtgcttctgagatcagtttacaatgtgggaatcatatgacttgtatc
acccatgccaaaaaggcttctgaacttgtgcttcctgatgattatttattctttgcgcat
ctactattatgccgtgtgtatgccatgaaaggtgatcatctaagttttcaaaaagaatat
ataaggtgtttggagctcaagacagattatcacattggttggatctgtctcaaacttatg
gaatgtcaatatgaactgcaaattgattcaaataccatagacttgaactttgaagaatgt
gttaaaagaagtggaaagttgtgcaatatgtggatggctgtatataacctggtgagaggt
atgatttccttgcagaagagggatttagtctcagcagaagatttcatggcacaggcttgt
tcattagcaggttttgagagctgcctctttctatgtcatggtgccatctgtatggaactt
gttcggcagtgccatggttctcagttcctatcacgggccattaatagtcttaccaaagtt
catgagcattcacttattcccttaccttttgtctcggtattggtagctcaagcagaagga
agccatggttctaaggagaggtggaacagaaaccttcggcttgaatggtataattggcca
ccagaaatgaggcctgcagagctctactttcaaatgcatatgcttgcacgacagttgaaa
gttggaccaaacgctagcatagagtccactcagagtcctcatagatgggttattcgagca
attcacatgaacccttcttgcatgcgatattggaggattttacagaagcttatggaagag
acttga
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integrated database retrieval system
