Glycine max (soybean): 100779917
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Entry
100779917 CDS
T01710
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
gmx
Glycine max (soybean)
Pathway
gmx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100779917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmx03041
]
100779917
Spliceosome [BR:
gmx03041
]
Complex B
Other components
Prp19-related factors
100779917
Complex C
100779917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_YTH1
RRM_occluded
zf-CCCH_3
zf-CCCH
zf-CCCH_10
zf-CCCH_4
RRM_3
zf-CCCH_PARP12
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
100779917
NCBI-ProteinID:
XP_014628391
UniProt:
I1NE13
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All DBs
Position
20:10205284..10209874
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AA seq
481 aa
AA seq
DB search
MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGR
DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKVRPNDTIMKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMSTLEAPEDESIKTLYVGGLDARVT
EQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQTSKPESDGSDQARPQASVAHSGLLPRAVISQQQNQDQAQGMLYYNNPPPPQQERSYYP
SMDPQRMGALVSSQDGPPGGPSGLGENKPGLEKQQMQHYAHPMMPPQPGQYHQYYPPYGY
MPPPPPYHQYPPPPYNAAVAPSQPPAANHPYQHSMQPGSSQPGSSQAASAPAETGTSTSG
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggcgcataggttgctgagagaccacgaagcagacggttgggagcgctccgatttcccc
atcatctgcgaatcctgcctcggcgacagcccctacgttcgaatgacaaaagcagagtat
gacaaggagtgcaagatttgtacacgtccattcactgtttttagatggagacctggtcga
gatgctagatataagaaaaccgagatctgtcagacatgtagtaaattgaaaaatgtctgt
caagtgtgccttctggatcttgaatacggactacctgttcaagttcgagacacggctctc
agtatcgattccaatgatgccattccaaagagtgatgttaacagggagtattttgctgaa
gagcatgaccgtagggctagagctggtatagattatgaatcctcttatggtaaagtacgc
ccaaatgatactatcatgaagcttcaaaggacaacaccatattacaaaagaaaccgagca
catatttgcagtttctacataaggggtgaatgtaccagaggagctgagtgcccttataga
catgagatgccagtaactggggaattgtctcaacaaaatattaaagatcgttactatggg
gtgaatgatccagtggctttgaagctacttggcaaggcaggagagatgtccaccctggag
gctcctgaggatgagagcattaaaacgctttatgttggtggacttgatgctagggtcact
gagcaggatttgcgggatcacttctatgcccatggagaaattgaatctatcaaaatggtt
ctccaacgggcttgtgcttttgtaacatatacaaccagagaaggtgcagaaaaggcagca
gaagaactctccaacaaactggttattaagggccttaggctaaagctgatgtggggcagg
cctcagacatcgaaacccgagtctgatggttctgatcaagctaggccgcaggcatctgta
gctcatagtggattgttgcctcgggcagttatatcacagcagcaaaaccaggaccaagcc
caaggaatgctttactataacaatcccccacctcctcagcaggaaagaagctactaccca
tcaatggatcctcaaagaatgggtgctcttgtttcatcccaagatggtcctcccggtggg
ccttctgggttgggggagaacaagcccggtttggagaagcagcaaatgcaacattatgcc
catccaatgatgcctcctcaacctggccaataccatcagtattatccaccatatggttat
atgccaccacctcccccttatcatcagtaccccccacctccatacaatgctgcagtggct
ccgtcccagccaccagccgcaaatcatccttatcagcattctatgcagccaggttcttca
cagccaggatcttcccaggctgcatctgcgccagctgaaactggaacatcaacatcaggg
tcatag
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