Glycine max (soybean): 100782189
Help
Entry
100782189 CDS
T01710
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100782189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100782189
03012 Translation factors [BR:
gmx03012
]
100782189
Enzymes [BR:
gmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100782189
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100782189
Translation factors [BR:
gmx03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
100782189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
R3H
HA2_C
Ank_2
nSTAND3
AAA_19
AAA_22
ATPase
HA2_N
Ank_5
AAA_14
Ank_3
AAA_7
ABC_tran
AAA_23
Rad17
PhoH
Sigma54_activat
Motif
Other DBs
NCBI-GeneID:
100782189
NCBI-ProteinID:
XP_003518495
UniProt:
K7KB99
LinkDB
All DBs
Position
2:48298331..48306714
Genome browser
AA seq
1162 aa
AA seq
DB search
METTTKNKREKKKGEPLFRQNPNVDEVTRIRISQILEHFRASNDEVYKFDADLSNQERAL
VHQMALKMGFRSKSYGLGKERRVCVQKMKKKVDTDNGFGSLPQFTFSGEAKWVLGDLFAH
YPPGDGNSWEMVGENSDTATDRTKQRPDDIFSRPSMTKAEIARRLEALTSRMNNVSNLKQ
IIEGRSKLPIVSYKDSITSTVESHQVVLISGETGCGKTTQVPQFILDHMWGKGEVCKIVC
TQPRRISATSVSERIASERGETIGENVGYKIRLESRGGRQSSIVLCTTGVLLRVLVSKGS
HSSKIGRVKDEISGITHIIMDEIHERDRYSDFMLAIIRDMLPLYPHLCLILMSATIDAAR
FSQYFGGCPIIHVPGFTYPVKTFYLEDVLSIVKSRPDNHLDSTTCSIPKTTCELSEEEKL
SIDEAINLAWSNDEWDLLLELVSSEGTPDLFHYQHSLTGLTPLMVFAGKGRVGDMCMLLS
CGADCHLRAKDGMTALEIAERENQPEAAEILKKHMDNDFSNSIEEKKLLDKYLATVNPEL
VDDVLIEQLIRKICIDSTDGGILVFLPGWDDINRTRERLLASPFFKNSSMFMLISLHSMV
PSMEQKKVFRHPPHGCRKIVLSTNIAETAITIDDIVYVIDTGRMKEKSYDPYNNVSTLQS
SWISKASAKQREGRAGRCQPGICYHLYSRTRAASLPDFQIPEIRRMPIEELCLQVKLLDP
SCKVEEFLRKTLDPPVFESISNAILVLQDIGAFSNDEKLTHLGEKLGSLPVHPLICRMLF
FAILMNCLDPALTLACASDYRDPFTLPMLPEEKKRASAAKSELASLYGGCSDQFAVLAAF
ECWNNAKKMGLEARFCSQYFVSSSAMNMLSGMRRQLQAELIRIGFIHEDVSGYSVNTHDP
GVLHAVLVAGLYPRVGRFLTNKGGKRVIVETTSGDKVRLHNHSTNFKLSFKKNLDNTLIV
YDEITRGDGGMNIRNCTVVGPLPLLLLSTEIAVAPAEENDEGDVDDAVGSEDEAGSEDGM
EFDAESSGGREDKLMSSPDNMVKVIMDRWLYFRSTAIDVAQLYCLRERLSAAILYKVTHP
RNTLPPIMAASVHAIACILSCDGCIGVSAMLEGVDTLTTMVNATSLGKPATGTRRFGKRP
KGSLAELLNYDGRQNSGPHFKA
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgacgacgaagaacaaaagagagaagaagaaaggagagccacttttccgtcaa
aaccccaacgttgatgaagtcaccaggattcgcatttcccagattctagaacacttccga
gcttccaatgatgaagtctacaagtttgatgctgatttgtccaaccaagagcgtgctttg
gtgcatcaaatggccctcaaaatggggtttagatctaaaagttacgggctagggaaggaa
aggagagtgtgtgttcaaaaaatgaaaaagaaggttgacacggataacgggtttggaagt
cttcctcaattcacattttctggagaggcaaagtgggtgctgggtgatttgtttgctcat
tatccgcctggcgatggaaactcatgggagatggtcggagaaaatagtgacactgctact
gacagaacaaaacagaggccggatgatattttcagcaggccctctatgaccaaagctgaa
attgctaggagattggaagctcttacttctagaatgaacaatgtctctaacttgaaacag
atcattgaagggagatctaagcttccaattgtgtcttacaaggattcaattacatcaact
gttgaatctcaccaggttgttctaatatctggtgagactggttgtggaaagaccacgcag
gtcccacaatttattttggatcatatgtggggtaagggagaggtatgtaaaatagtttgc
actcagcctcggcggatctctgcaacttcagtttccgagagaattgctagtgagagagga
gagactattggagaaaatgtgggatataagatacggttagaaagcagaggtggaaggcaa
tcatcaattgtgctatgtactactggagtgctattaagggtgctggtttccaaaggttct
cattcgtcaaagattgggcgtgtgaaggatgagatttctggcatcactcacataattatg
gatgaaattcatgaaagggatcgatactcagacttcatgttggcaatcatcagagacatg
ctccctttatatcctcacctatgtctgatattaatgagtgctaccattgatgctgctaga
ttttctcaatattttgggggctgcccaatcatccatgttccgggcttcacatatccggtc
aaaactttctatttggaggatgtactttctattgtaaaatccaggcctgataatcatctt
gatagtaccacatgtagtattccaaaaaccacttgtgagctaagtgaagaagagaagctt
tccattgatgaagctattaatttggcttggtctaatgatgagtgggacctgctgttagaa
ttggtttcttcggaaggaaccccagatctatttcattaccaacattctttaactggcctt
actccattaatggtgtttgctggaaaaggtagagtgggtgatatgtgcatgctcttatct
tgtggggcagattgccatttaagggccaaagatggaatgactgcattggagattgctgaa
agggaaaaccaaccagaagcagccgaaatattgaagaagcacatggataatgatttttcc
aactccatagaagagaagaaattacttgataaatacctggcaacagtcaacccagaactt
gttgatgatgttttgatagagcagctgataagaaaaatatgtattgattcaacagatgga
gggatccttgtttttcttccgggctgggatgatataaatagaacacgtgagagattgctt
gcatcaccttttttcaagaattcctcaatgtttatgctcatatctctgcattcaatggtt
ccaagcatggaacaaaagaaggtttttaggcacccacctcatggttgtcgcaaaattgta
ctatctaccaatattgctgaaacagctatcaccattgatgatatagtgtatgtcatagac
accggacgaatgaaggaaaaaagttatgatccttataacaatgtgtcaactcttcagtca
tcttggatttcaaaagcaagtgctaagcagcgagagggacgtgctggccgttgtcaacct
ggtatatgctatcatctatattcaaggactcgagcagcttccttgccagattttcagatt
ccggaaattaggagaatgcctattgaggagctttgtctgcaggtaaagttgcttgatcca
agttgcaaagtagaagaatttctacgcaagacattagatcctccagtttttgagtccata
agcaatgctattttagttcttcaagatattggggctttttcaaatgatgaaaaactcacc
catctaggggagaagcttggttctcttcctgttcacccattaatatgcaggatgcttttt
tttgctatattgatgaactgccttgatccagctttaactcttgcatgcgcatctgattat
agagatccatttacacttccaatgttacctgaagaaaagaagagagcttcagctgccaaa
tctgagcttgcttctttatatgggggttgtagtgatcagtttgccgtattggctgcattt
gaatgctggaataatgcaaagaaaatgggtctagaagcacggttttgttctcagtatttt
gtgtcttcaagcgccatgaatatgttatcaggcatgcgcaggcaactccaagcagaatta
attcgaattgggtttattcatgaagacgtgtcaggttacagtgtgaatacacatgaccct
ggtgtgctccatgcggttttggtagcaggtttgtatccaagggttgggagatttctaaca
aataaaggtggaaaaagggttatagttgaaacaacaagtggagataaagttcgcctgcac
aatcattccacaaattttaagttgtcattcaagaaaaatttagataacactttaattgtg
tacgatgagattactcgcggtgacgggggtatgaacataaggaactgcacagttgttgga
ccacttccacttttgctgctttcaactgagattgccgttgctccagcagaagaaaatgac
gagggggatgtggatgatgcagtaggtagtgaagatgaagctggaagtgaagatgggatg
gagtttgatgccgagtccagtggaggccgtgaggataagttgatgtcttctcctgataat
atggttaaagtaatcatggaccgttggctttattttcgttcaacagcaattgatgttgct
cagctatactgcttgagagagcgattatcagcagcaattttatacaaagtcacacatcca
aggaatacacttcctcccatcatggcggcatctgtgcatgctatagcttgtattctgtca
tgtgatgggtgcattggtgtgtcagcaatgttagaaggtgtggacacactaaccactatg
gtaaacgcaacgtctttgggcaagccagcaacaggtactaggcgttttggtaagagacca
aaaggatcccttgcagagcttttaaattacgacgggcgccaaaactctgggcctcatttc
aaagcatag
DBGET
integrated database retrieval system
