Glycine max (soybean): 100782527
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Entry
100782527 CDS
T01710
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100782527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmx03041
]
100782527
Enzymes [BR:
gmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100782527
Spliceosome [BR:
gmx03041
]
Complex C
Other components
Step II factors
100782527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
PhoH
TsaE
AAA_29
Motif
Other DBs
NCBI-GeneID:
100782527
NCBI-ProteinID:
XP_003517845
UniProt:
I1J614
LinkDB
All DBs
Position
1:8351934..8373131
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AA seq
705 aa
AA seq
DB search
MPSVQRGSFSNRQTQFSERRQKIIQQRKSLPIAPVEKRLVEEVRKHDVLIIVGETGSGKT
TQIPQFLFDAGFCCDGRVIGITQPRRVAAVTVAKRVAEECGVELGQKVGYSVRFDDATSG
LTRIKYMTDGLLLREALLDPYLSKYSVIIVDEAHERTVHTDVLMGLLKSVQLARSSSVSG
GQGLNFGNKNMNKLFEKENDQSGIFLKKPRHEKYAPLKLIIMSASLDARAFSEYFGGAKA
VHIQGRQFPVDIFYTRDAETDYLDASLITIFQIHLEEGPGDILVFLTGQEEIESVERLIS
EKLPQLPQESQKLLVVPIFAALPSEQQMRVFAPSPSGFRKVILATNIAETSVTIPGIKYV
IDPGFVKARSYDPGKGMESLIIIPTSKSQALQRSGRAGREGPGKCFRLYPEREFEKLEDS
TMPEIKRCNLSNVILQLKALGVDDILGFDFIDKPSRAAIIKSLEQLFLLGALTDECQLSD
PVGHQMARLPLDPLYSKALILASQFNCLEEMLITVALLSVESIFYSPRDKLEEARTATKC
FSSPVGDHITLINVYRASNDFLEKRSMEMNMAKTEKVYRKWCKENFINSRSLRHARDIHR
QIQGHVEQMGLNLSSCGDDMLQFCRCLAASFFINAAVKQPDGTYRALASGQMVQIHPSSV
LFRQKPECVIFNELVQTNHKYVRNLTRVDYLWLTELAPQYYAMHN
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcagtgcaacggggaagcttctccaatcgccaaacccaattctccgagcggagg
cagaagattatacaacagaggaagtctcttccgattgctccagttgagaaaagactggtt
gaagaggttcggaagcacgatgtgttgattatcgttggcgaaactggaagtggaaagacc
actcagattccgcagtttctgtttgatgctggattttgttgcgatggaagggttattggg
ataacacaacctagacgtgtggctgctgtcactgtggctaaacgtgttgctgaggagtgt
ggtgttgagttgggccagaaggtcgggtattcagttaggtttgatgatgctacttctggc
ttaacaaggatcaaatatatgacagatgggttgcttttgagggaagcattgttggatcca
tatctttcaaagtattctgttataattgttgatgaagcacatgagaggactgttcatact
gatgtcttgatgggcttgctaaaaagtgtacaacttgctcggtcaagttctgtaagtggt
ggccagggccttaattttggaaacaagaatatgaataagttgttcgagaaagaaaatgat
cagagtggcatttttcttaaaaagccccgccatgagaagtatgctccattgaagttaatc
atcatgtctgcaagtctggatgcacgcgctttctctgagtactttggtggtgccaaagct
gttcacatccaagggagacagtttcctgtagatatattttatacccgtgatgcagagaca
gattatttagatgcttccttgataacaatattccagattcatttagaggagggccctggt
gatatactagtatttctgactgggcaagaagagattgaatctgttgaaaggcttatcagt
gagaaactcccacaattacctcaagaaagtcagaagcttctagttgtgcctatatttgca
gctcttccatctgagcagcaaatgcgggtctttgcaccatctccatctgggtttcggaag
gtgatattggcaactaatattgctgagacatcagtaacaattcccggaatcaagtatgta
attgatcctggatttgttaaagcacgttcttatgaccctggaaaaggcatggaatccttg
attataatacctacatccaagtcccaagctctgcaaagaagtgggcgtgcagggcgtgaa
ggacctggaaaatgcttccgtctatatcctgaaagagaatttgagaaacttgaggactca
acaatgccagagattaagcgttgcaacctttctaatgtcattttgcagcttaaggctttg
ggtgttgatgacatactagggtttgatttcattgataaaccttcaagggcagctattata
aaatcgttggagcagctatttttgttaggtgctctaacagatgaatgtcaactatctgat
cctgttggtcatcaaatggctcgactgcccttggatcctctttattccaaagctcttatt
ttagctagtcagtttaactgcctggaggagatgttgataactgtggcactgctgtctgtg
gaatccatattttatagtcctcgtgacaagttagaagaggcaagaactgcaacgaaatgc
ttctcaagtccagtgggagaccacatcactttgattaatgtgtatcgagcatctaatgat
ttcttggagaagagatcaatggaaatgaatatggcaaagactgaaaaggtttatagaaaa
tggtgcaaagaaaattttattaatagccggtctcttagacatgctcgtgacattcacagg
cagattcagggacatgttgaacaaatgggtctgaatctttcttcttgtggagatgatatg
cttcaattctgcagatgccttgctgcttcctttttcatcaatgcagctgtcaagcagcct
gatgggacatacagggctttggcaagtggtcagatggtgcagatccacccttcttctgta
ttattccggcaaaaaccagagtgtgtgatatttaatgagttggtccaaactaaccataag
tatgtccgaaatttaaccagagttgattacctatggttaaccgagctggctcctcaatat
tatgctatgcacaattaa
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