Glycine max (soybean): 100783415
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Entry
100783415 CDS
T01710
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X2
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
gmx
Glycine max (soybean)
Pathway
gmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100783415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100783415
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100783415
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100783415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
100783415
NCBI-ProteinID:
XP_006598983
UniProt:
I1ML37
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Position
16:complement(3948583..3959563)
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AA seq
878 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRHKA
HIKKCEFILRLLDNDELSPEEVNDVKDFLDDYVERNQDDFDEFDDVDELYSSLPLDKVET
LEDLVTIPPGLSKVAPSLSLKNTLTVSASQSASASQTSEQADDTESQDSNSDIVAKTPPP
KSGGISSATSTPVGNHATPVSVNISGHNLSGAPVAALPSSNSVRNVLENTNVTNSSSVNQ
STSTKEEDINSFPSRRPSPSLSDATLLRDRNSLSNQATASVPLGSGNMVSSNVALGSVSS
ASEIAKRNIMGADDRLGSSGMVQPLVSPLSNRLILPQAAKANDGIVSVDSSTVNEAAAGR
VFSPSGVPGMQWRPGSPFQNQNDAGQLRGRTEIAPDQREKFLQKYQQVQQGHSTLLNMPS
LVGGNHKQFSAQQQNPLLQQFNSHGSSVSSQSGIGLGVQSTSLGGISSASLQQPPNPVHS
PSSQQPLMPDVGNSKIEEQQQHQNFPDDSTIESIASTGIGKNLINEDDSKSAYTVDSPAA
VSASLPESAQTSRDIDLSPGQPLQSNQLTGNLGVIGRRNGAEHGAIGDNFSGSNVSSGGV
RDQLYNLQMLEAAHFKIPLPKDSERPRTYTPKHPAITPPSYPQVQAPIVNNPAFWERVGL
EPFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGT
YVYFDFHIANDDMQHGWCQRIKTEFTFEYNYLEDDLLV
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagtagaaaactccagggagagatagatcgcgttctcaagaaggttcaggaa
ggcgttgaagtcttcgatagcatctggaacaaggtttacgacactgacaatgctaaccag
aaggagaaatttgaagcggacctcaagaaggagattaagaagctccagaggtacagagac
caaattaagacttggattcagtccagtgagatcaaagacaaaaaggttagtgcctcatat
gagcaggctttggtggatgcacgcaagctaattgagcgggaaatggaaagatttaagata
tgtgagaaggaaactaagaccaaagcattctccaaagaaggcttgggtcaacagcctaag
actgatccaaaagagaaggctaaatcagagacaagggattggttaaacaatgtggttgga
gagttagaatcccaaattgatagctttgaagcagagcttgaagggctttctgttaagaaa
ggaaagaccaggccacccagattgacacatctagagacatcaattactcggcacaaggct
catataaaaaaatgtgaattcattttgaggctactagataatgatgaattaagtcctgag
gaggttaatgatgtcaaagatttcttggatgactatgttgagcgtaatcaggatgatttt
gatgaatttgatgacgttgatgaactatacagttcattacctttagataaggtggagact
ctagaagatcttgttacaattccccctggtctttctaaggtggcacctagtcttagcttg
aagaatactttgacagtatcagcatcacaatcagcatctgcatcgcaaacatctgagcaa
gctgatgacacagagtcccaggatagcaattctgacattgttgccaaaactccacctcct
aaaagtgggggaattagttctgctacttcaactcctgttggcaaccatgcaactcctgtt
tccgtgaatatttctggtcataacttgtctggtgcacctgttgcagccctacctagttca
aattctgtgcggaatgtcttagagaatactaatgttaccaattcatcatctgtaaatcag
tctacctctacaaaggaagaagatattaatagcttccctagccggagaccgtctccatca
ctttctgatgcaacacttttgagggacagaaacagcctatcaaatcaagcaacagccagc
gttcctcttggttctggaaacatggtttctagcaatgtggcccttggatcagtctcttca
gcctctgaaatagctaaaaggaacataatgggagctgatgatagacttggaagtagtggg
atggtgcagcctcttgtatccccgctaagtaatagattgatcttgcctcaggctgcaaag
gctaatgatggaattgtttcagttgactctagtactgttaatgaagccgcagccgggaga
gttttctccccttctggggttcctggcatgcaatggagacctggaagtccctttcagaat
cagaatgatgcaggccagcttcgtggaagaactgaaatagctcctgatcaaagggaaaag
tttttgcagaagtatcagcaagtgcaacaagggcatagtacccttcttaatatgccttct
cttgttgggggaaaccataagcagttttctgcccagcagcaaaatccccttttgcagcag
tttaactctcatggctcatctgtttcttctcaatctggtattggacttggggtccagtcc
acaagtcttggtggtatttcttctgcttcactacagcagccacccaatcctgtccattcc
ccctctagtcaacagccattgatgccagatgttggcaattctaagattgaagaacagcag
cagcatcagaatttccctgatgattcaacaatagaatctattgctagcactgggattggc
aagaatctcataaatgaagatgattcaaaatcagcatatactgtagattctcctgcagca
gtgtctgcctctcttccagaatctgctcaaacttccagggatattgatttgtctcctggc
caaccattacaatctaatcaactaactggcaaccttggtgtcattggaagaagaaatggt
gctgagcatggagccattggtgataattttagtgggtcgaatgttagttctggtggagtg
cgtgatcaattatataatttgcaaatgcttgaggcagcccacttcaaaattccactaccc
aaagactcggaacgtcccaggacttacactcctaagcacccagcaattacacctcccagc
tatcctcaagtacaggcacctattgttaataatcctgctttttgggagagggttggtctt
gaaccatttggtactgatactctgttctttgcattttattatcaacagaatacttaccaa
caatatttggctgcaaaggagttaaagaagcagtcttggagataccaccgaaagtataac
acatggtttcagcggcatgaagagcccaaagttgcaaccgatgaatatgagcagggaact
tatgtgtactttgatttccatattgcaaatgatgacatgcaacatggatggtgtcaaaga
atcaagactgaattcacttttgagtataattatcttgaagatgatcttcttgtatag
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