Glycine max (soybean): 100783662
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Entry
100783662 CDS
T01710
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
gmx
Glycine max (soybean)
Pathway
gmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100783662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100783662
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100783662
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100783662
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
zf-C2H2_CASZ1_1
Motif
Other DBs
NCBI-GeneID:
100783662
NCBI-ProteinID:
XP_003538029
UniProt:
I1LK90
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All DBs
Position
11:complement(11113116..11121028)
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AA seq
647 aa
AA seq
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MSGLLNSSLNGSASNLPDGAGRSFASSFSGGIQGLHNIHGSFNVPNMPGTLTSRNSTINN
VPSGGVQQPTGSLSSGRFTSNNLPVALSQLSHGSSLGHSGVTNRGGISVVGNPGFSSSTN
GVGGSIPGILPTSAAVGNRNAVPGLGVNPILGNAGPRITSSVGNMVGGGNIGRTGGGLSV
PGLSSRLNLGANSGSGGLGMQGQNRLMSGVLPQGSPQVISMLGNSYPSGGPLSQSHVQAV
SNLNSMGMLNDMNSNDSSPFDINDFPQLTTRPSSAGGPQGQLGSLRKQGLGVSPIVQQNQ
EFSIQNEDFPALPGFKGGNADYAMDMHQKEQLHDNTVPMMQSQHFSMGRSAGFSLGGTYS
SHRAQQQQHAPSVSSGNVSFSSVNNQDILHLHGSDIFPSSHSTYHSQTSGPPGIGLRPLN
SPNTVSGMGSYDQLIQQYQQHQNQSQFRLQMSAVNQSFRDQGMKSIQTAQPAPDPFGLLG
LLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWTDESAKGDPEFTVPQCYF
AKQPPALHQGYFSKFSVETLFYIFYSMPKDEAQLYAASELYNRGWFYHKEHRLWLIRVPN
MEPLVKTNTYERGSYHCFDPSIFETVRKDNFVLHYEMLEKRPHLPQL
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttacttaattcttctctgaatggatctgcttcaaatcttccagatggtgct
ggacggtcttttgcttcatcattttctggaggcattcaaggattgcacaatattcatggg
agctttaatgttcccaacatgcccggtacactcacatcaagaaactcaactataaataat
gtaccatcggggggtgttcaacaacccactggaagcctttctagtggaagatttacatcc
aacaatctcccagttgcattgtctcagctatctcatggaagctcccttggacattcagga
gtcaccaatagaggaggtataagtgttgtaggaaaccctggatttagtagtagcacaaat
ggagttggtggttctattccggggattcttcctacatctgctgcagttggtaaccgaaat
gctgttccaggattgggagtaaacccaattttgggaaatgcaggtcctcgaatcacaagt
tctgtgggaaacatggttggaggagggaatattggaaggactggtggaggattgtctgtg
cctggtctctcgtctcgtctaaatttgggtgcaaacagtggatccggtggtttaggtatg
caaggacagaatcgattaatgagtggtgtgcttccacaagggtctccgcaggtaatttca
atgctaggaaattcttatcctagtgggggtccactttcccaaagccatgttcaagcagtg
agtaacttgaactctatggggatgttgaatgatatgaattctaatgacagttcacctttt
gacatcaatgacttccctcaactgacaactcgtcctagttctgctggagggcctcaagga
cagttgggttctttacgaaaacagggtcttggtgttagtcccattgttcaacaaaaccaa
gagtttagcattcaaaatgaagatttcccagctttaccaggattcaaaggtggtaatgca
gattatgctatggatatgcaccagaaagaacaacttcatgacaatactgtgccaatgatg
caatctcagcatttctctatgggaaggtcagctggtttcagcttagggggtacatattca
tcacatcgagcacaacagcaacagcatgctccttcagtcagtagtggcaatgtctctttt
tcatctgttaacaaccaggatattctccatctacatggatcagatattttcccatcttca
cattcgacctatcattcacagaccagtggacctcctggcattggattaaggccgctaaat
tctccaaatacagtttctggtatgggttcatatgaccagctcatccagcaatatcaacag
caccaaaatcagtcccagttccgccttcaaatgtcagctgtaaatcagtcttttagggat
cagggcatgaagtctattcaaactgcacaaccagcaccagatccatttggtttgcttggc
ctgttaagtgtgatcaggatgagtgatcctgacctgacatctcttgctcttggaattgat
cttactacactggggttaaatttgaattcatcagaaaatcttcacaagacctttgggtct
ccatggactgatgaatcagctaagggagatccagagtttacagtgccacaatgttatttt
gccaaacagccacctgctctacatcaaggttatttttccaagttttcggtggaaacattg
ttttacatattttatagcatgcccaaagatgaagcccaattatatgccgccagtgagctt
tacaacagaggttggttttatcacaaagaacatcgtttatggttaataagagttcccaac
atggagccgctggttaaaacaaacacatatgagagaggatcttatcactgtttcgatcca
agcatatttgaaaccgtccgcaaggataattttgttctacattatgaaatgttggaaaag
agaccacatctgcctcaactttga
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