Glycine max (soybean): 100784916
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Entry
100784916 CDS
T01710
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
gmx
Glycine max (soybean)
Pathway
gmx03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100784916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmx03021
]
100784916
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100784916
Transcription machinery [BR:
gmx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
100784916
RNA polymerase I system
100784916
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
100784916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW6_SPT51-2
Spt5-NGN
KOW2_Spt5
KOW
KOW4_SPT5
KOW7_SPT5
KOW5_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
100784916
NCBI-ProteinID:
XP_003523402
UniProt:
I1JYX6
LinkDB
All DBs
Position
4:complement(49734762..49744044)
Genome browser
AA seq
1050 aa
AA seq
DB search
MSRRGMDDDDEEEYEEQDEQVADFDEEEDEQVADFVEEEEEGSHRGRGGGGGRKRGRSGF
IDDDAEEVDEDEEEEDDDDEDFDGRGGGGGRRRQYKKVSASNFFDEEAVVDSDEEEEEEE
GEDDFIVEGGSDLPEEDDGRRMRSSRMLPHHQEDHEDLEAMARSIQERYGRRLTDYDEET
TDVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYI
YVEADKEAHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRLKIGTYK
GDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELH
IRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGESGDG
DVASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGKVEKVDEDNVHIRPEMEDLPKTIAV
NEKELCKYFEPGNHVKVVSGAQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSE
VTTGVTRIGDYELRDLVLLDNNSFGVIIRVESEAFQVLKGIPDRPEVVLVKLREIKCKID
KKISVQDRFKNTVSSKDVVRIIDGPCKGKQGPVEHIYRGILFIFDRHHLEHAGFICAKAQ
SCVVVGGSRSSGDRNGDAYSRFASLRSPSRIPPSPRRFSRGGPMDSGGRHRGGRGHDSLA
GTTVKVRQGPYKGYRGRVIDVKGTTVRVELESQMKVVTVDRNHISDNVAVTPYRDTSRYG
MGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDPAWNPYTPMSPPRDNWEDGNP
GSWAASPQYQPGSPPSRPYEAPTPGAGWASTPGGNYSEAGTPRDSSAYANAPSPYLPSTP
GGQPMTPSSASYLPGTPGGQPMTPGTGGMDMMSPVLGGENEGPWFIPDILVNVHRAGEES
VGVIREVLPDGSYRVALGSSGNGEAITALPNEMEAVVPRKSDKIKIMGGALRGATGKLIG
VDGTDGIVKVDDTLDVKILDLVILAKLAQP
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgccgtggcatggacgacgacgacgaggaggaatacgaggagcaggacgagcag
gtcgccgacttcgacgaggaggaggacgagcaggtcgccgacttcgtcgaggaggaggag
gagggcagccaccgaggacgcggcggcggtggcggcaggaagaggggaagatctggcttt
atcgatgacgacgccgaggaggtcgacgaggacgaggaggaggaggacgacgatgacgag
gatttcgatggccggggtggcggtggcggtcggaggcgccagtacaagaaggtttccgcc
tctaatttcttcgatgaagaggccgtggtggatagtgatgaggaagaggaggaagaagag
ggagaagacgacttcattgttgagggtggatctgatctgccggaagaagatgatgggaga
aggatgcgtagtagccgtatgctgccacatcaccaagaggatcatgaagatcttgaagct
atggccagaagcatccaggaacgttatggaaggcgcctaacagattacgatgaagaaacg
acagatgtggagcaacaagctcttttgccatctgtgagagatccaaagctgtggatggtc
aaatgtgcaattggtcgtgagagagaaacagctgtttgcctcatgcaaaagtacatagat
aaggggtctgagttgcaaataagatcagctattgctctcgatcatctcaaaaactatata
tacgtggaagcagataaagaagcccatgtcagagaggcttgcaaaggtctgcgcaatata
tttggccaaaaaataacacttgttccaatcagagaaatgactgatgttttgtctgttgaa
agtaaagctattgatcttgctagagatacttgggtcagattgaagatcgggacatataaa
ggggaccttgccaaagtagtggatgttgataacgtgcggcagagggttactgtcaaatta
attccaaggatagacttacaggctcttgcaaacaaattggaaggtagagaagttgtgaaa
aagaaggcttttgttcctcctcctcgttttatgaatgttgatgaagcaagggaactgcat
atccgtgtggagcatagacgcgatgcctatggggaacgatttgatgcaattggaggcatg
atgttcaaagatggattcttatacaaaactgtatcgataaaatccattagtgctcagaac
atcaaacctacttttgatgagcttgaaaaatttcgtaaaccaggcgaaagtggagatggt
gacgtagctagtctgtcaactttgtttgcaaacaggaagaaaggccattttatgaaagga
gatgctgttattgttgttaagggtgatttaaagaacttgaaggggaaggtggagaaagtt
gatgaagataatgttcatataagaccagaaatggaggatcttccaaaaactattgctgta
aatgaaaaggaactttgtaaatattttgaacctggaaaccacgttaaggtagtttctggt
gctcaagagggggctacaggcatggttgtgaaggtcgagcagcatgtgttgatcttaata
tctgatacaacaaaagagcatatccgtgtctttgcagatgatgttgtagaaagttcagaa
gtaaccactggagttacaagaattggggactatgaacttcgtgatcttgtattgctagat
aataatagctttggtgtgataatacgtgttgaaagtgaggcatttcaggttcttaagggg
attcctgacagacctgaagttgtgcttgttaaattaagagagatcaaatgtaagatagat
aagaaaataagtgtgcaggataggtttaagaatacggtatcgtcaaaggatgttgtgcgg
atcattgatggtccctgcaaaggaaagcaaggtcctgtggagcacatatatagaggaatc
ttgttcatctttgatcgccatcatcttgaacatgcaggctttatatgtgctaaggcccaa
tcatgtgtagttgtgggaggttcacgctccagtggtgacagaaatggggatgcctactca
agatttgccagtcttagaagtccaagtcgtattccaccgtccccgaggaggttttctcga
ggagggccaatggattctggagggagacataggggtggaaggggccatgatagtttggct
gggacaaccgttaaagtacgccaaggtccctataaaggttaccgtgggcgtgttatagat
gttaaaggcacaacagttcgtgttgagttggaatcccaaatgaaggttgtgacagttgac
cggaaccatatatctgacaatgtggctgtaaccccatatcgtgatacatctcgctatgga
atgggaagtgaaacaccaatgcatccttctcgaactcccttacatccatatatgactcca
atgagagatcctggagcaacacctattcatgatggaatgagaacacctatgcgtgaccca
gcatggaatccttatactccaatgagtcctccaagggataactgggaagatggaaatcca
ggctcttgggcagccagtccacagtatcagcctggaagccctccttcacggccatatgaa
gccccaactcctggtgctggttgggctagcactcctggtggaaattatagtgaagctgga
acaccgcgggacagttctgcctatgccaatgctccaagcccatatttaccatcaacacct
ggtggacagcctatgacaccgagttcagcatcttatcttcctggcacccctggaggacag
cctatgactccaggcacaggtggtatggacatgatgtctccagttttaggtggggaaaac
gaagggccttggtttatcccagatatattggtcaacgtacacagggctggagaggaatct
gttggagttataagagaggttctcccggatggctcttacagggtagctcttggatctagt
ggcaatggtgaagcgattacagcccttcctaatgaaatggaggctgtggtaccaagaaaa
tcagacaaaataaagattatgggtggggcattgcgtggtgccaccggcaaattgattggt
gtagatggtactgatggaattgtaaaggtagatgacacattggatgtgaagattttagac
ttagttattttggcaaaattagctcaaccatga
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integrated database retrieval system
