Glycine max (soybean): 100785358
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Entry
100785358 CDS
T01710
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03013
Nucleocytoplasmic transport
gmx03015
mRNA surveillance pathway
gmx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100785358
09122 Translation
03013 Nucleocytoplasmic transport
100785358
03015 mRNA surveillance pathway
100785358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100785358
03041 Spliceosome [BR:
gmx03041
]
100785358
Enzymes [BR:
gmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100785358
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100785358
Spliceosome [BR:
gmx03041
]
Complex C
Other components
EJC/TREX
100785358
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100785358
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
100785358
NCBI-ProteinID:
XP_003531708
UniProt:
I1KVD4
LinkDB
All DBs
Position
8:complement(17138273..17143415)
Genome browser
AA seq
426 aa
AA seq
DB search
MGELKDTEAYEEELIDYEEEEEKAPDSAKPVTESGKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLC
HTRELAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALA
RDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLQETEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDT
STYMPN
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggagaattgaaggacactgaggcttacgaggaagagctcatcgactacgaagaagaa
gaagaaaaagctcccgattccgctaaacccgttactgaatctggcaagaagggttatgtt
ggcatccatagttcgggatttcgagacttcctgttgaaaccagagcttcttcgagccatt
gtagattcaggatttgagcatccttcagaagtgcaacacgaatgcatccctcaagcaatc
ttaggaatggatgtcatttgccaagcgaaatctgggatgggaaagactgctgtttttgtt
ttgtctacacttcagcaagttgatcctgttcctggtcaagttgcagctcttgttctttgc
cacacaagagaactggcttatcagatttgccacgaatttgagaggttcagcacatatctt
cctgatataaaggctgctgttttctatggtggtgtcaacatcaaggttcacaaagaattg
ctcaagaatgaatgcccacacattgttgttggaacacctgggaggattcttgctctggct
agagataaggaccttggtttaaagaacgtgaggcattttatacttgatgagtgtgacaag
atgctcgaatcacttgatatgagaagagatgtgcaagagatcttcaaactgactccccat
gataagcaagtgatgatgttttcagctacactcagtaaagagatccgaccagtttgcaag
aaatttatgcaagatcccatggaaatttatgtcgacgatgaggccaaattgactcttcat
ggtcttgtccagcactatatcaaattgcaagagacagaaaagaatcgtaagctgaatgat
cttcttgatgctctggatttcaaccaagtagttatttttgtcaaaagtgtcagcagagct
gccgagttgaacaagttgcttgtggagtgtaacttcccatctatctgcatacattctgca
atgtcacaggaagagagattgaaacggtacaagggcttcaaagaagggaagcaaaggatt
ctcgtggcaacagatttagttggaagggggattgacatagaacgtgttaatatagttatt
aactatgacatgcctgattctgctgatacttacttgcacagggtgggaagagctggcaga
tttggcacgaagggacttgcaattactttcgtgtcctctactgctgactctgaggttctt
aatcaggtgcaatctaggtttgaggttgacataaaggagcttcctgaacaaattgacact
tcaacatatatgccaaactga
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