Glycine max (soybean): 100786092
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Entry
100786092 CDS
T01710
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
gmx
Glycine max (soybean)
Pathway
gmx03013
Nucleocytoplasmic transport
gmx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100786092
03015 mRNA surveillance pathway
100786092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100786092
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100786092
mRNA cycle factors
P-body specific factors
100786092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
100786092
NCBI-ProteinID:
XP_003533845
UniProt:
I1L252
LinkDB
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Position
9:complement(11454684..11470970)
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AA seq
1188 aa
AA seq
DB search
MDHQEDESNSKQDDEEAVARLEEIKKSIEAKLALRQSNLNPERPDSGFLRTLDSSIKRNT
AVIKKLKQINEEQREALMDELRSVNLSKFVSEAVAAICDAKLRSSDIQAAVQICSLLHQR
YKDFAPSLVQGLLKVFSPGKPGDESDTDRNLKAMKKRSSLKLLLELFFVGVIEDGGIFIN
IIKDLTSGEQLKDRDAAQTSLTLLSSFARQGRIFLGLSVSGPEIHEEFFKGLNITADQKK
VLRKACYSFYDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDHLY
RNISSLAEALDMQPPVMPEDGHTTRVTSGEDGISSASGKDSSVVEPIWDDEDARTFYECL
PDLRAFVPAVLLGETEPKSSEQSAKNQDQTTEILPESDKGQQTTHESGEVSTESSALPEA
ESTERVKDKEEKDKSKELDREKEKEKENDKKGENEKDKLRSVEGTNLDALLQRLPGCVSR
DLIDQLTVEFCYLNSKSSRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSILLQ
MLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKISPPGLVFSCLKACLDDFTHHNIDV
ACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSA
RVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWNECEPYLLKCFMKVYKGKYGQI
HLIASLAAGLSRYHDEFAVAIVDEVLEEIRVGLELNDYGMQQRRIAYMRFLGELYNYEHV
DSSVIFETLYLILIYGHGTQEQDVLDPPEDCFRIRLIITLLETCGHYFDRGSSKRKLDRF
LIHFQRYILSKGALPLDIEFDLQDLFVDLRPNMVRHNSIEEVNAALVELEEHDRIVFADK
ASSEKHSDTEKSLSRTTSTTTVVGNGQSIDNGMEENGVQDDNDSETDSGSDTIDVEGHDD
EELDEENHDDGCETEDDDDDDDDGPGPASDEEDEVHVRQKMTQVDPLEEANFDQELKAVV
QESMEQRRQELRGRPTLNMMIPMNVFEGSAKDHHGRGVGGESGDEPLDEDTGGNKEVQVR
VLVKRGNKQQTKQMFIPRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEELNGLGT
QATNWMQSVGYKGGGRGSSLEGNSGRGSGSRHRHHNYSGSGIYYSRRK
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccaagaggatgaaagtaacagcaaacaagacgatgaggaagctgttgctcgc
cttgaggaaataaaaaaatccattgaggcgaagctggctttacggcaaagcaatttgaat
ccagaaaggcctgactcaggatttttaaggacattggattctagcattaagcgcaacact
gctgttattaagaaactgaagcagattaatgaagaacagcgtgaagctctgatggacgag
ttgcgaagtgtcaacttaagcaaatttgtcagtgaagccgtggctgctatatgtgatgcc
aagcttagaagttctgatatacaagctgcagttcagatctgttctttgcttcatcaaagg
tacaaggactttgcaccaagcctggttcaagggcttctgaaagtcttctctcctggaaaa
cctggtgatgaatcagatacagacagaaatttgaaggcaatgaagaagcgcagctctcta
aagcttctactggaactcttttttgttggagttattgaagatggtggcatttttatcaat
atcataaaagatcttaccagtggggaacagctaaaagatcgggatgctgcacaaacaagt
ttgacccttctttcgagttttgctcgccaagggagaatttttcttggactttctgttagt
gggccggaaattcatgaagagttttttaaaggccttaacatcacagcagatcagaagaaa
gttttacggaaagcatgctattccttttatgatgctgcagctgaattacttcagtctgag
cattcttcacttcgcttaatggagcatgaaaattctaagattttgaatgcaaaaggagag
ctcagtgatgaaaatattgcttcatatgaaaagcttcgtaaatcctatgaccatttgtac
cgtaacatctcatcattagcagaagcacttgatatgcagcctcctgtaatgccagaggat
ggccacacaactagggttaccagtggtgaggacggtatttcttctgcttctggtaaagat
tcttctgttgttgaacccatatgggatgatgaagatgcaaggactttctatgaatgttta
cctgatcttagagcttttgttcctgctgtgcttttgggagaaacagagcctaaaagcagt
gaacaatctgcgaagaatcaagaccaaacaactgaaatattacctgaatcagacaaaggt
caacagaccacccatgaaagtggagaggtctctacagagtctagtgctttgccagaggca
gaaagcacagaaagagtgaaggataaggaggaaaaagacaagtctaaagaattggacaga
gagaaggaaaaagaaaaagaaaatgacaaaaagggagaaaatgaaaaagacaaactcaga
agtgttgaagggacaaatttggatgctctactgcagaggcttccgggttgtgtgagccgg
gaccttattgatcaattgactgtggagttctgttatctaaattcaaaatcaagtcggaaa
aagcttgtgagggctttgttcaatgtaccaaggacatctctggaattgttaccatattat
tcacgcatggttgccactctctcaacttgtatgaaggatgtctcgtccattcttttgcag
atgttggaggaggaattcaacttcttaataaataaaaaggatcagatgaacattgagaca
aagataaggaacatcaggttcattggagaactttgcaagttcaaaatttcccctcctggc
ctagtcttcagttgtttgaaggcctgtttagatgattttacacaccacaacattgatgta
gcttgcaatcttcttgaaacatgtggccgttttctgtatcggtctccagaaactactata
cgtatggctaacatgttggagatactgatgcggttgaaaaatgtaaaaaacttggatccg
agacatagcactttggtggagaatgcatactacctttgcaagccaccagaaagatctgca
cgagtagctaaagttcgtcctccattgcatcagtatatcagaaaattacttttctctgat
cttgataagtctaccattgagcatgtgctgaggcaactccgtaagttaccttggaatgaa
tgtgaaccatatcttttgaaatgcttcatgaaggtctacaaaggaaaatatggtcagatc
cacctgattgcatctcttgctgctggattaagtcgctatcatgatgagtttgctgtagct
atcgttgatgaggtactggaggagattagagttgggctggagttaaatgactatgggatg
cagcaaagacgcattgcttacatgcgattcttgggggagctttacaactatgagcatgta
gactcatctgttatttttgagacactatatctcattctcatctatggccatgggacacaa
gagcaagatgtactggatccacctgaagattgttttcgcataaggttgatcattactctg
cttgaaacttgtgggcattactttgatcgtggctcttctaagaggaaacttgatcgattc
ctaatacacttccagaggtatattttaagcaaaggggcactgcctctggacatcgaattt
gacttacaggatctgtttgtggacttgcgtcccaatatggttcgtcacaattctattgag
gaagtgaatgcagctctcgtagaactcgaggaacatgatcgaattgtttttgctgataag
gccagtagtgaaaaacattctgacactgagaagtctttaagtaggaccacttccactact
acagtggttggcaatggacaaagcattgataatggtatggaagaaaatggagtgcaagat
gataatgacagtgagactgattcagggagtgacacaattgatgttgagggacatgatgat
gaagagttggatgaggagaatcatgatgatgggtgtgaaactgaggatgatgacgacgac
gacgatgatgggcctggacctgcttctgacgaggaggatgaagtccatgtgagacaaaaa
atgacccaggtggaccctctggaagaagccaattttgatcaggagctcaaggctgtagta
caggagagtatggaacagcgaaggcaggagctacgaggtcgtcctacattgaacatgatg
attccaatgaatgtatttgagggatctgccaaggatcaccatgggaggggagttggtggg
gaaagtggtgatgagcccctggatgaggatactggaggaaacaaagaggttcaggtgaga
gttcttgtgaagcgtggaaacaagcagcaaacaaagcagatgttcatcccacggaattcc
tcactggtgcagagtacaaaacagaaagaagcagcagagcttcaagagaaagaagacatc
aagaggcttgtcttggagtataatgacagagaagaagaggagcttaatggattagggacc
caggcaacaaactggatgcagagtgtaggttacaagggtggtggccgtggcagcagtttg
gaaggaaacagtggcaggggtagtggatcaagacatcggcatcataattattctggcagt
ggaatctattacagtagaagaaagtga
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integrated database retrieval system
