Glycine max (soybean): 100786288
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Entry
100786288 CDS
T01710
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
gmx
Glycine max (soybean)
Pathway
gmx03013
Nucleocytoplasmic transport
gmx03015
mRNA surveillance pathway
gmx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100786288
09122 Translation
03013 Nucleocytoplasmic transport
100786288
03015 mRNA surveillance pathway
100786288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100786288
03041 Spliceosome [BR:
gmx03041
]
100786288
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100786288
Spliceosome [BR:
gmx03041
]
Complex C
Other components
EJC/TREX
100786288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
100786288
NCBI-ProteinID:
XP_003552110
UniProt:
I1MYV2
LinkDB
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Position
18:1459035..1462946
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AA seq
708 aa
AA seq
DB search
MSSKYQILDNRPINQWKVTELKDELKRRKLSIKGLKDDLVKRLDEVLRLEREADEASEKD
EANGFDGHVDGEKDSEAVTVDAEMVDSTDRDNAKTFETAEKGKSGVVDPVEIENVEKIPE
VVDHDSNKNDKQDGVTNQVDINNSVSAIDQEVEPKGLPAGGDSANVGQEAIAHGSTVEKT
TITVNESVVTEVVASAEDSYRAEKNNEDSAAKLENEESKAQLDGEDSKPQLDCDIKPLHE
DPVPDSSVPENQVSEVNPSLGSQVKSDSISTDSLSINQKNELKDTIITDNVKLEQDIVKP
EMVEEPSSRNDVPVSYDESHSMDVGGLHEKKASVEENFNNVLSPDMNKTNSSDDVGYPEE
LNLDRSSGDDSMEEDLPETKQIDSKFNVDELKDKIEIEEPIVKEESSTIAVGDGLSAGES
DIHQDIDISPVAPTEKRKFNEQASVGNNEPAKRQRRWNTETVKGPDAQSTTPRPATTPRD
EPIALKRNFSRSDSSATDDTPKERIVPPPQRSPTNSLRIDRFLRPFTLKAVQELLGKTGN
VSSFWMDQIKTHCYVTYSSVDEAIETRNAVYNLQWPPNGGRLLVAEYVDPEEVKMKLEPP
PTQAASVSTVPAVPPAPPSQPEPSPRLHREPHPVPATLPPPPPLSKPPPVARERLPSPPP
LPEKVDPPIVTLDDLFRKTTATPRIYYLPLSEEQVASKLTAQGKSARQ
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcaaaatatcagattcttgacaaccgccctattaatcagtggaaggttacagag
ctaaaagatgagctgaagaggaggaagttaagtatcaagggtttgaaggatgatttggtc
aagcgtttggatgaagtccttcgtcttgaaagggaggctgacgaggcttctgagaaggat
gaggccaatggtttcgatggtcatgtagatggggaaaaagattcagaggcggttactgtg
gatgctgaaatggttgattcaactgacagggacaatgccaaaacatttgagactgctgaa
aagggcaagagcggtgtagttgatcctgttgaaatagaaaatgtggaaaagattccggag
gttgtggatcacgacagcaataagaatgacaagcaggatggtgttaccaaccaagttgac
attaataatagtgtgtcagccatagatcaagaggttgaacctaagggcttgccagctggt
ggagattctgcaaatgtgggacaggaggcaattgcccatggttctactgtggagaagact
accattacagttaatgagagtgtagtaacagaagtagtggccagtgctgaggattcttat
cgtgcagaaaagaataatgaggattcagcagcaaagctggagaatgaggagtcaaaggcg
cagctggatggtgaggactcaaagccccagctggattgtgacatcaagcccttgcatgag
gatcctgtgcccgactcttctgttccagaaaaccaggtatctgaggtcaaccctagttta
gggtctcaagtaaaatctgattctatttctactgattctctgtcaattaatcaaaagaat
gaactaaaggatactataattactgataatgtcaaattagaacaagatattgttaagcca
gagatggtggaagaaccatcatccagaaatgatgtacctgtttcttatgatgaatcacat
tcaatggatgttggagggctgcatgagaaaaaggcatctgttgaagaaaatttcaataat
gttttaagtccagacatgaacaagaccaatagcagcgatgatgtggggtatcccgaagag
ttgaacttggacagaagttctggtgatgattctatggaagaggatttgcctgagactaag
caaattgattctaagtttaatgttgatgaacttaaagacaaaatagagattgaagagcct
attgtgaaggaggaaagtagtactatagctgttggagatggtctgtctgcaggagaaagt
gatatccaccaagatattgacattagtccagttgctccaacagagaaacgaaaatttaat
gaacaagcatcagttgggaacaatgagcctgcaaaaaggcaacgcaggtggaacactgaa
acagttaaaggtccagatgcacaaagcactactcccaggcctgctactacacctagagat
gagccaattgctttgaaacgcaacttctctaggtctgattcctctgcaactgatgataca
cctaaagaacgcattgttccaccaccacaaaggtccccaactaattccctcaggattgat
cgttttctccgtccatttaccctaaaagcagtgcaagaacttcttggtaagactgggaat
gtcagcagcttctggatggaccaaataaagacccattgctatgtgacttactcgtctgtg
gatgaagccattgagacacggaatgctgtatataatttgcaatggccaccaaatggtggg
cgtctcttagttgctgagtatgttgatcctgaagaagtgaaaatgaagttagaacctcct
cctactcaggctgcatctgtcagcactgtcccagcagttcctcctgcacctccctcacag
ccagagccttcccctcgtctgcacagggagccgcatccagttccagctactctcccacct
ccaccaccattgtcaaaacccccaccagtagcaagagaacggcttccatctccaccaccc
cttcctgagaaagttgacccacccattgtcactctggatgatctctttcgcaaaaccaca
gccactcctcggatctactatctacctttgtctgaagagcaagttgcctcaaaacttaca
gcacagggtaaaagcgcgaggcagtag
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