Glycine max (soybean): 100786834
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Entry
100786834 CDS
T01710
Name
(RefSeq) small nuclear RNP family protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
gmx
Glycine max (soybean)
Pathway
gmx03018
RNA degradation
gmx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100786834
09123 Folding, sorting and degradation
03018 RNA degradation
100786834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100786834
03041 Spliceosome [BR:
gmx03041
]
100786834
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100786834
mRNA degradation factors
5'-3' decay
Lsm complex
100786834
Spliceosome [BR:
gmx03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
100786834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
100786834
NCBI-ProteinID:
NP_001242473
UniProt:
A0A0R4J2Y1
C6TJE9
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Position
3:43037547..43040250
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AA seq
148 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEGPGGRPTKGIGRGLDD
GGARGAGGSRGRGGPSGKPGGNRGRGRG
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctctttcccttctcaagactgcccaaggccaccctatgttggtggaactgaaa
aatggggagacatataacgggcatttggttaattgcgacacatggatgaacatccatctg
cgagaagtcatttgtacatctaaagacggagatagattttggaggatgcctgaatgctac
atacgaggcaatacaatcaagtaccttcgagtacctgatgaggttattgataaagttcaa
gaagaaaccaagagccgtgcagatcgcaaaccacctggtgttgggcgtggaaggggaaga
ggcagagaggaaggtcctggtgggcgcccaacaaaaggaattgggcgtggtcttgatgat
ggtggtgctaggggagctggaggaagccgaggcaggggtggtcccagtggaaagcctggt
ggaaacagagggcgtggtagaggttga
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