Glycine max (soybean): 100787354
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Entry
100787354 CDS
T01710
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gmx
Glycine max (soybean)
Pathway
gmx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100787354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmx03021
]
100787354
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100787354
Transcription machinery [BR:
gmx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100787354
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100787354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
100787354
NCBI-ProteinID:
XP_006589602
UniProt:
K7LLB6
LinkDB
All DBs
Position
10:47994725..48001211
Genome browser
AA seq
922 aa
AA seq
DB search
MFSQNMILPPENPRPAGFASKPMGNEIAKPPPSILVGRFKALLKQRDDELRATSVPVPPP
STDEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVPVDQKLPS
LYLLDSIVKNFGQEYIRYFSLRLPEVFCEAYRQVQPSLHSAMRHLFGTWSKVFPPSVLHK
IEAELQFSQAVNTQSSTPNPVRASESSRPSHGIHVNPKYLRQLERSTVDSASKTHQFLSS
SSRLGISSSSPLRIGVDRPLSASIDEYAVDNPGVDYGVAKALGRDVDLTEWQRKLYSGDG
RNRFPTSFTYSLSNGHQRQSSRALIDAYGSDKSQETSSSKSLLVERLDRNGIDKVLSTSW
QNTEEEEFDWENMSPTLIDHSRNNSLLPSTFGFSRERPGVAANATLSEQDTRKGWSSGSQ
LPPVDDSSAIAEDAFASSTFCRAPPGQVPGSQNQINHSLGSSQPHDAWKISHHPSNIFSN
RGRARNLMIPPIDNIRNTDNNPYWVRPAVSRMEAHPSVLPAPFEMRPSVNVNVTRPPIIN
PLQKHVRSQFDAMNTSNPIANHVVNKSSFMPEQSFDSVENKDASILKIHQLPNQLSGVIS
SNQQNHGQAPQLQFFPSQDPSTSQFSHGSSSQGHGVSISTAMSNPLPVLPFPLPFQSISN
NPLHLQGGAHPPLPPGRPPAPSQMIPHPNAGAFMPSQQPTVGYTNLISSLMSQGVISLAN
QLPAQDSVGTEFNPDILKIRHESAVNALYGDLPRQCTTCALRFKCQEEHSSHMDWHVTKN
RMSKSRKQKPSRKWFVSDRMWLSGAEALGTESAPGFLPTETIEEMKDHEELAVPAEEDQN
TCALCGEPFDEFYSDEMEEWMYRGAVYLNAPLGITAGMDRSQLGPIIHAKCRSESNMATS
EDLGLDEKGADEEGSQRKRMRS
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgttttcacaaaacatgattctccctcccgaaaaccctagacccgcggggttcgcttcc
aaacccatgggcaatgagatcgcgaagcctccgccgtcgattctcgttggccgcttcaag
gctctcctcaagcagcgcgacgatgaactccgagccacatccgtccccgtcccgccgccg
tccaccgacgaaatcgtccagatttacgaactcctgctgtcggaactcacgtgcaatttg
aaacccatcatcaccgatctcacaattatcgccgaacagcagagggagcacgccaaaggt
atcgctgacgcaatctgcgctcggattctcgaggttccagtagatcaaaagcttccttca
ctctatctgttggacagtattgtgaagaattttgggcaggaatacattagatacttctct
ttacgtcttcctgaagttttctgtgaggcatacaggcaggttcagcctagtttgcattct
gcaatgcgccatctttttggtacttggtcaaaagtctttccaccttcagtcctgcacaag
attgaagctgagttgcaattttctcaagcagttaatactcaatcatccaccccgaatcct
gtcagggcttctgaatcatctcgaccaagtcatggcatacatgttaatccaaaatacttg
cggcagttggagcgctctactgtggatagtgctagtaagacacatcaatttttatcaagc
agtagcaggcttggaatatcctcgtcgtcccctttaagaattggagttgataggcctttg
tctgcatctatagatgaatatgcagtggacaatcctggtgttgattatggagtagccaaa
gcattaggtagagatgtggatttgactgaatggcagcgaaagctgtattctggtgatggt
cgtaatcgatttccaacttcttttacgtacagccttagtaatggacatcagcgtcaaagt
tcaagagctttaattgatgcatatggcagtgacaaaagtcaagaaacttcaagcagtaag
tctttgttagttgaacgtctggatagaaatggtatagacaaagtgttatcaacatcatgg
cagaatactgaagaggaggagtttgactgggaaaatatgagtccgaccttaatagaccat
agtaggaataacagtttattgccttcaacttttggtttctctagggaaaggcctggcgtt
gcagctaatgcaactttgtcagagcaagatactaggaaggggtggtctagtggatctcag
cttcctccagtagatgattcttctgccatagcagaagatgcatttgcctcttcaactttt
tgtcgtgcacccccaggtcaggtacctggatcccaaaatcaaatcaatcatagcctgggc
tcctctcaacctcatgatgcttggaagatttctcatcatccgtctaacatttttagtaat
agggggcgggcaaggaatcttatgatccctccaattgacaacattcgcaatacagataat
aacccatattgggttcgacctgcagtgtcgaggatggaagctcacccatcagttttgcca
gcaccttttgaaatgaggccttctgtaaatgtgaatgtcactcggccacccatcataaat
ccgttgcaaaaacatgttaggagtcagtttgatgccatgaatactagtaatcctattgcg
aaccatgttgtaaataaatcttcatttatgccagaacagtcatttgacagtgttgagaac
aaggatgcaagtattttaaagatacatcagttgcctaatcagctttctggagtaatttcg
tccaaccagcaaaatcatgggcaggcaccacaactacagttttttccttctcaggatcca
tcaacctcacaatttagtcatgggagttcatcgcagggacatggtgtttctataagtaca
gccatgtcaaatccattaccagttctaccattccctttaccatttcaaagtatttcaaat
aaccctttacatttacagggtggagcccatccacctttacctcctggtcgccctcctgct
ccatctcaaatgataccccatccaaatgctggtgcatttatgccaagccaacagccaact
gttggatatactaatttaattagttctctaatgtctcaaggcgtgatctcattggctaac
cagctgcctgcacaggattctgttggaactgagtttaatccagatattctgaagattcgt
catgagtctgcagtcaatgccttatatggtgatctccctagacaatgcacaacttgtgcg
ctccgattcaaatgccaagaggaacacagtagtcatatggattggcatgtgactaagaat
cggatgtctaaaagccgtaagcagaaaccctctcgtaagtggtttgttagtgaccggatg
tggctcagtggtgcagaggcattgggaacagaatcagctccaggttttttgcctaccgaa
accatagaagaaatgaaagatcatgaggagttggcagtgccggcagaagaagaccagaat
acatgtgcattatgcggagagccttttgatgagttttacagtgatgaaatggaggaatgg
atgtatagaggagctgtatacctcaatgcacctttaggaataacagcaggcatggatagg
tcacagttaggccccataattcatgctaaatgcagatcagaatctaatatggccacctct
gaagatcttgggctggatgaaaagggtgccgatgaagagggttcccaaaggaaacgaatg
cggagttga
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