Glycine max (soybean): 100788958
Help
Entry
100788958 CDS
T01710
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gmx
Glycine max (soybean)
Pathway
gmx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100788958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmx03021
]
100788958
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100788958
Transcription machinery [BR:
gmx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100788958
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100788958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Roughex
Motif
Other DBs
NCBI-GeneID:
100788958
NCBI-ProteinID:
XP_006577057
LinkDB
All DBs
Position
3:41363873..41369997
Genome browser
AA seq
1036 aa
AA seq
DB search
MSMESTRRSLDRSREPGPKKPRLIDELSARQLPQRTAAVTTLASTRFRANDRDSEISDLG
RGGGGGGYQPQPPPHQELVTQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAAAVCA
NIIEVPSDQKLPSLYLLDSIVKNIGRDYIKYFASRLPEVFCKAYRQVDPCVHSSMKHLFG
TWKGVFPPQSLQMIEKELGFAPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQ
QSSRSKGVVSDMTGAVLNSNEDSERPDRAAARPWLDPRINMLNNQHTHRDAFNDSVTEKS
IDGSYGSSEYSSVISSNLVSGAGRTGSKLIDLGHDKTWFKTDGGDADTTSGQRNGFGLKR
SFSNQEAPKSMNLDAHRQPRQSITNLRNNVMSGNWKTSEEEFTRDEMNNGLIDHGPNVLS
NLSTDTWMADDENLEGEDHLHLQITRPIGTKVDREISTVKKQLPGLGGHPPSSWQLQKHH
SIDKLNLKPDYSEGFVSTLSGLPTNASSLAVKKGNQSFMSNAVVGMTKFVGQQFDSGETE
SPSGQSPLRQQSPSLPGTVHHPHSMQNLANQELPPSLKTSQLLGGQIISQHIRDHSPTLR
PIVKVGNLRRSQEKDMQGPLSSMTSLRPKLQQKQLNPSQTEVTATTKLPQSKVSLTRETS
EQLTTNNLSAAPVKTGIIPKKSITSNLDPRKRPSQTGVQPTQSGRPTTLISSGSAVASPS
SLDPLHNDSSTLPKKPKGKAGQPPQRLSTQPPASSNVSSSSAPILNAAKNNKPNPIANLL
STLVAKGLISAETESPTTVPSVAPKGSKDQTEIITTSCSLPVTSISGSAAVPVSSSDDEV
DAATKTCLASPQSTSTEIRNLIGFDFRPNVIREFHPSVIRELWDDIPHHCKVCGIKLKQE
ELFNRHLEWHATREHGPIKASRSWYAKSSDWIAGKAEYSSESEFNDSVDVHDEKTGSSQL
DTMVLADENQCLCVLCGELFEDVYCHERNEWMFKGTIYMNYSDVNSEMESGNVGPIIHAK
CLSENSIITNLVRPII
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgagcatggagagcacgcgcagatcgttggacagatccagagaaccaggtcccaagaag
cctcgattgatcgacgaactcagcgcccgacagttacctcaacgcactgcggcagttact
acgctggcgtctacgaggtttcgagcaaatgacagagactccgaaatcagcgatttgggt
cgtggcggtggcggcggcgggtatcagccgcagcctccgccgcaccaagagcttgtgact
caatacaagaccgcacttgctgagctcactttcaattcgaagccgataattaccaacttg
actattattgcaggagagaatctctctgctgccaaggcaattgctgctgctgtttgtgct
aacattatagaggttccaagtgatcaaaaactgccatctctttacctcttagacagtatt
gttaagaacattggacgggattatataaagtattttgcttccagactacctgaggtattc
tgcaaggcttacagacaggttgatccttgtgtgcattcaagtatgaaacatctttttgga
acttggaaaggagtctttcctcctcagtcccttcagatgattgagaaggaacttggcttt
gcacctgcagtcaatggttcggcttcagtgtctgctacagtcaggagtgatttgcagtca
caacgcccacctcatagtatccatgtgaatcccaagtatttagaaaggcagcgtcttcag
cagtcaagtaggagcaaaggagtagttagtgatatgactggagctgttttaaactcaaat
gaggattcggagaggccagatagagctgctgcacgaccctggctggatccgaggattaac
atgcttaataatcagcacacacacagagatgcatttaatgattctgttactgaaaagagc
attgatggatcatacggaagcagtgaatatagttctgtcatttcaagtaatttggtctca
ggggctggaagaactggaagtaagctcattgatttaggacatgacaaaacatggttcaaa
acagatgggggtgatgcagatactacatctgggcaaagaaatggttttggtctcaagcgt
agtttttcaaatcaagaagcaccaaagtccatgaatttggatgcacatcgtcagccaaga
caaagcataactaacttacggaacaatgtgatgtcaggtaactggaaaacttctgaagaa
gagttcacgcgggatgagatgaacaatggtttgattgatcatggacccaatgtattaagc
aatttgagcacagacacatggatggctgatgatgaaaatttggaaggtgaagatcacctc
cacctccaaatcacacgcccaattgggacaaaggtcgatagagaaatatccactgttaag
aaacaactacctggtttggggggccatccaccatcatcatggcaattgcagaagcaccac
tcaattgataagttgaatctaaagccagattactctgaaggatttgtgtccactcttagt
ggcttaccaaccaatgcaagttctttggctgtcaagaaggggaaccaatcctttatgtcc
aatgcagtagtaggaatgaccaaatttgtgggacaacaatttgattcgggtgaaactgaa
tccccttctgggcagtcacctttgcggcaacagtctccatcactgccaggaacagtacac
caccctcattcaatgcaaaacttggctaaccaagaattgccaccgagtctcaaaacctct
caacttttgggaggtcagataatcagtcagcatattagagatcactcacctacccttcgt
cccattgtaaaggttggtaacttgcgaagatcacaagaaaaggatatgcagggcccatta
tcttccatgacctctcttcgaccaaagcttcagcaaaagcagctgaacccatctcagact
gaagttactgctacaactaagctgccccagtctaaagtttctttaaccagagaaacttca
gaacagttgaccacaaataatttgtcagctgcacctgtcaaaactggaatcatccccaag
aaatcaattaccagtaatctggatccaaggaagcgtccatctcagactggggttcagcct
actcagtctggtaggcctaccacattaatttcttcagggtctgctgtggcatcaccatct
tcattagatcctctgcataatgattcatctacactgccaaaaaaacctaaaggaaaggct
ggacaaccaccacaaaggctttctactcaaccacctgcttcctctaatgttagcagttcc
tcagctccgatcttaaatgcggccaaaaataataaaccaaatccaattgcaaacctttta
agcacattggttgcaaagggtttgatatctgccgaaacagaatcaccaactacggtacca
agcgtggcaccaaagggatccaaagatcaaactgagatcattaccaccagttgttcttta
ccagttacatcaatttctggttctgcagctgtcccagtatcgtcttccgatgatgaggta
gatgctgctacaaaaacctgtcttgcctcacctcaatcaactagcacggaaatcagaaat
ctcattggctttgattttagacctaatgtaattcgagaattccacccatctgtaattagg
gaattatgggatgatatccctcatcattgcaaagtttgcggtattaagcttaaacaagaa
gaactctttaatagacacttggagtggcatgccacaagagaacatggtccaattaaggca
tcaagaagttggtatgcgaagtcaagtgattggattgctggcaaggcagaatattcatct
gagtccgagtttaatgattctgttgatgtacacgatgaaaaaacaggcagcagtcaattg
gatacgatggttctagcagatgaaaaccagtgtctgtgtgtattgtgcggcgagctattt
gaagatgtgtactgtcatgaaaggaatgagtggatgttcaaagggaccatttacatgaac
tattcagatgtcaatagtgagatggaaagtggaaatgtgggtcccatcattcatgccaaa
tgcttatcagagaactcaatcatcaccaatttggtaaggcctattatctga
DBGET
integrated database retrieval system
