Glycine max (soybean): 100789382
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Entry
100789382 CDS
T01710
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
gmx
Glycine max (soybean)
Pathway
gmx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100789382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gmx03041
]
100789382
Spliceosome [BR:
gmx03041
]
Complex B
Other components
Prp19-related factors
100789382
Complex C
100789382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_YTH1
RRM_occluded
zf-CCCH_3
zf-CCCH
zf-CCCH_10
zf-CCCH_4
RRM_3
zf-CCCH_PARP12
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
100789382
NCBI-ProteinID:
XP_014620825
UniProt:
I1LW99
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All DBs
Position
13:17062098..17066387
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AA seq
467 aa
AA seq
DB search
MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGR
DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDSALSIDSNDAIPKSDVNREYFAE
EHDRKARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMSTLEAPEDESIKTLYVGGLDARVT
EQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQTTKPESDGSDQARQQASVAHSGLLPRAVISQKQSQDQTQGMLYYNNLPPPQQERSYYP
SMDPRRMGALVSSQDAPGGPSGSEENNPGLEKQQMQHYAHPMMPPPPGQYHQYYPPYGYM
PPPPPYHQYPQPPYNAAAAPSQPPAAAPSQPPAANHPYPHSMQPGSS
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggcgcataggttgctgagagaccacgaggccgacggctgggagcgctcagatttcccc
atcatctgcgaatcctgcctcggcgacagcccctacgttcgaatgacaaaagcagagtat
gacaaggagtgcaagatttgtacacggccattcactgtttttagatggagacctggtcga
gatgcaagatataagaaaactgagatctgtcagacatgtagtaagttgaaaaatgtctgt
caagtgtgccttctggatcttgaatatggactaccagttcaagttcgagactcggctctt
agtattgattccaatgatgccattccaaagagtgatgttaatagggagtattttgctgaa
gagcatgaccgtaaggctagagctggtatagattatgaatcctcttatggtaaagtacgc
ccaaatgatactatcctgaagcttcaaaggacaactccatattacaaaagaaatcgagcg
catatttgcagtttctacataaggggtgaatgtactagaggagctgagtgcccttataga
catgagatgccagtaactggggaattgtctcaacaaaatattaaagatcgttattatggg
gtgaatgatccagtggctttgaagctacttggcaaggcaggagagatgtccactctggag
gctcctgaggatgagagcattaaaactctttatgttggtggacttgatgctagggtcact
gagcaggatttgcgggatcacttctatgcccatggagaaattgaatccatcaaaatggtt
ctccaacgggcttgtgcttttgtaacatatacaaccagagaaggtgcagaaaaggcagca
gaagaactctccaacaaattggttattaagggcctaaggctaaagctgatgtggggcagg
cctcagacaacgaaacccgagtctgacggttctgatcaagcaaggcagcaggcatctgta
gctcatagtggattgttgcctcgggcagttatatcacagaagcaaagccaggaccaaacc
caaggaatgctttactataacaatctaccacctcctcagcaggaaagaagctactaccca
tcaatggatcctcgaagaatgggagctcttgtttcatcccaagatgctcctggtgggcct
tctgggtcagaggagaacaaccccggtttggagaagcagcaaatgcaacattatgcccat
ccaatgatgcctcctccacctggtcaatatcatcagtattatccaccatatggttatatg
ccaccacctccgccttatcatcaatacccacaacctccatacaatgctgcagcggctcca
tcccagccacctgctgcggctccatcccagccaccagctgcaaatcatccttatccacat
tctatgcagccaggttcttcataa
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