Glycine max (soybean): 100789876
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Entry
100789876 CDS
T01710
Name
(RefSeq) uncharacterized protein LOC100789876 isoform X1
KO
K06100
symplekin
Organism
gmx
Glycine max (soybean)
Pathway
gmx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100789876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmx03021
]
100789876
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100789876
Transcription machinery [BR:
gmx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100789876
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
100789876
U7-dependent histone pre-mRNA processing factors
100789876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
100789876
NCBI-ProteinID:
XP_006578255
UniProt:
K7KJ12
LinkDB
All DBs
Position
4:complement(7763544..7789997)
Genome browser
AA seq
1343 aa
AA seq
DB search
MAAPTRDQVLSLLAAANNHGDLAVKTSSLKQAKDLLLSIDPSLAADLFPYLIELQSSPES
LVRKLLIQIIEEIGFKAVEHSPTMISLLLTFLRDGDAIVVKQSIVSGTNIFCSVFEELIV
QFQQYGKVERWLEDIWMWMLRFKDAVFGIAVEPASVGIKLLALKFLETFVLLFSSDIGDT
EKLATKGIRQAVNVEWLVGGHPHPVLDPVVLISDANRTIGILLNLLLSVGSLPGCLTITV
VNCLAAIARKRPQHYDTILSALLDFDPDFQRVKGCHVTSIQYSFRTAFLGFLRCTYSPIL
ESRERLIRSLRAMNAGDAADQVIRQVDKMIKNGDRSTRDARVSKDDQPSTQSPVSGELSR
KRPVPLDNEQLANGHDTISKRIRSGSDSHSTLPAQINDSRQDLSSVNGVSANVPVLDSEL
TAVEQMIAVIGALLAEGERGAESLEILISKIHPDLLADIVITNMKHLPKTPPPLARIANL
PVTRQLSSQVSQSQVIAASVPINSVQSLSGTAQASFPSPTPTVTVTVTTSLPSDTSNFSN
QPADSKRDPRRDPRRLDPRRVVVTPGGATVSIADDTGATKEFDEPVSSIKPVSLPVMTAD
DNTLSDLTVKIKNDDIISEGSPVSGPDQVTPKTEVLEMPGDIHQITEADTSLDPSLSSTD
LRDEDLSKAKLSEDTETIGTDSSIFEIDQSSIDVQVESTLEDTCLELPQLPPYIELSEEQ
GSKVKNMAVRRIIDSYKHLHGTDCQQFCMPLLARLVAQIDDNDEFITMLQKHILEDHWRK
GHELVLHVLYHLHSLMILDSVGNASSSAVLYEKFLLGLAKTLLDSFPASDKSFSRLLGEV
PLLPESSLKILNDLCYSDVIGHDGKIIRDIERVTQGLGAIWSLILGRPQNRQACLGIALK
CAVHPQDEIRAKAIRLVTNKLFQLSYISGDVEKFATKMLLSAVDHEVSDTGLLQSGHTEQ
IAEAEVESHEISCTSQVSESTISENDTAIFAKPSIQSVPSILFSEAQRLISLFFALCTKK
PSLLQIVFNVYGQAPKIVKQAFHRHVPVVVRALGQSYSELLHIISDPPQGSENLLTLVLQ
ILTQDTTPSSDLISTVKHLYETKFRDVTILVPLLSSLSKQEVLPIFPRLVDLPLEKFQRA
LAHILQGSAHTGPALTPVEVLVAIHGIVPEKDGLALKKITDACSACFEQRTVFTQQVLAK
ALNQMVDQTPLPLLFMRTVIQAIDAFPAMVDFVMEILSKLVSRQVWRMPKLWVGFLKCVY
QTQPRSFHVLLQLPPQQLESALNRHANLRGPLASYASQPTVKSSLSRSTLAVLGLANETH
EQHLSSSLHSSDTSSSVHGATLT
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcctaccagggaccaagtcctctctctcctcgccgccgccaacaaccacggc
gacctcgccgttaaaacctcatcgttgaaacaggccaaggaccttcttctctccattgac
ccctctctcgccgccgacctcttcccttacttgattgagcttcagtcttctcccgagagc
ctcgttcgcaaattgctcattcagataattgaggagattggttttaaagcagttgagcac
tctcctacgatgatatctttactattaacatttttacgagatggcgatgcaattgttgta
aagcagtctattgttagtggcacaaatatcttctgtagtgtttttgaggagttgattgtg
cagtttcaacaatatggtaaagttgagaggtggctagaagatatttggatgtggatgctt
aggttcaaggatgctgtttttgggattgctgtggagcctgcttctgttggaataaagttg
ctggccctgaagttcttggaaacgtttgtattactcttttcatctgacatcggtgatact
gagaaattagccacaaaaggaattaggcaagctgttaatgtcgaatggttggttggtggt
caccctcaccctgttcttgatccagtggtgctcatatcagatgcaaataggactattggc
attctattaaatttattgctgtcggttggcagtcttcctggttgcttgactattactgtt
gtaaattgtttagcagccatcgcaaggaaaaggccacaacactatgatactattctttca
gcattgcttgattttgatccagattttcaaagagtgaaaggatgtcatgttactagtatt
cagtactccttcagaacagcttttttaggatttcttaggtgcacttattcaccaatacta
gagtctagagaaagactaataaggagcctgcgagctatgaatgcgggggatgctgctgat
caggtcattcggcaagttgataaaatgattaaaaatggtgatcgttctacccgcgatgca
cgggtgagcaaggatgatcaaccatcaactcagtcacctgtttcaggggaattatctaga
aaaagacctgttcctctagataatgaacaattggccaatggtcatgataccatctctaag
cgaattcgttctggttctgattctcactctactttaccagctcaaataaatgattctagg
caggatcttagctctgttaatggagtatcagctaatgttcctgtgctggatagcgaacta
actgctgtggagcaaatgattgctgtaattggtgctttacttgctgaaggagagagaggt
gctgaatctcttgaaattctcatttcaaagattcatcctgatctgttggctgatattgtc
ataactaatatgaagcacttaccaaagacccccccaccactagcaaggattgcaaattta
ccagtaacacgtcaattaagctcccaagtcagtcaatctcaggttatagcagcttctgtt
ccaataaattctgtccaatccttgtctggtactgcccaagcttcattcccttcacctacg
cccactgtcactgttactgttaccacttcattgccatctgacacctctaacttcagtaac
cagcctgctgattctaaacgtgatccacgacgggatccccgtcgcctggatccccggcgt
gtagtggtaactcctggaggagcaactgtatcaattgcagatgatactggggccacaaaa
gagtttgatgaacctgtgtcttccattaagcctgtttcacttcctgtcatgactgctgat
gacaatactctgtcagatctgacggtcaaaataaaaaatgatgatattatctctgaaggt
tccccagtttcgggacccgatcaagtaactccgaaaacagaggttctggaaatgcctgga
gatattcatcagattacagaagcagatacttccttggatccctcactctcttctactgat
ttaagagatgaggatctgagtaaagcgaagctgtcagaagatactgaaacaattgggaca
gattcatcaattttcgagattgatcagtcttctattgatgttcaagttgaatctacattg
gaagacacctgtctggagttaccacagcttccgccttatattgaactatccgaagaacag
ggaagtaaggtgaaaaacatggctgttaggcgtataattgattcatacaaacatttgcat
gggacagattgtcagcagttttgcatgccactacttgctcgactagttgcacagattgat
gacaacgatgagtttattacgatgctgcaaaaacatattttagaagaccactggcgaaag
gggcatgaacttgtactgcatgttttgtatcatctgcactccctcatgatattggattca
gttggaaatgcttcatcttctgctgttttatatgaaaaatttctcctgggtctggccaag
acgttgttggattcttttccagcttcagacaagtcttttagtagacttcttggtgaagtt
ccacttttgcctgagtcatccttgaagattttaaacgacctctgctattctgatgttatt
ggtcatgatggaaaaatcattcgtgacattgaacgtgtgactcaaggccttggtgctatc
tggagtttaattttggggcgtccacaaaatcgtcaagcctgcttaggaatagcattgaag
tgtgctgttcacccacaggatgagattcgagcaaaagctattcggctggtgacaaacaag
ctctttcagcttagttacatatcaggagatgttgaaaagtttgcaacaaaaatgctgctt
tctgctgtagaccatgaagtttcagatacaggtcttttgcaatctggacatactgaacaa
atagctgaggcagaggttgaaagtcatgaaataagttgtacttcacaggtttcagagtcc
acaatttctgaaaatgacactgctatatttgctaaaccatcgattcaaagtgttccatct
atattgttttctgaagctcaacgcctcatttctttgttttttgctttatgcacaaagaaa
cccagtcttcttcagatagtatttaatgtgtatggacaagccccgaaaattgtaaaacag
gcttttcatcgccacgttcctgttgttgtgagggcgttagggcaatcttattctgaattg
ctccatatcatatctgatccaccacaaggaagtgaaaatcttctgacactggtactgcaa
atattgactcaagacacgacgccatcttctgatttgatatctaccgttaaacatttgtat
gaaactaaatttagggatgttacgattcttgtcccgttactgtcttcgctttccaaacaa
gaggttttaccaatattccctcggcttgttgatcttccattggaaaagtttcaaagagca
cttgctcacatactacagggttcagctcatacgggtccagctttaacacctgtagaagtg
ttggttgcaatccatggaattgttcctgagaaggatggccttgcacttaagaagataaca
gatgcttgctcagcttgttttgagcaacgtacagtgttcacgcaacaggttctggcaaag
gcattgaaccagatggttgatcaaactccgctgcctctacttttcatgagaacagttatt
caggcaattgatgcttttcctgcaatggttgattttgttatggagatactctcaaaactt
gtgtctagacaggtgtggcgtatgccaaaactttgggttggattcttaaaatgtgtatat
cagacacagcctcgttcttttcatgtattattgcagttgccacctcaacagctggaaagt
gcactcaacaggcatgctaatctcagaggtccccttgcttcttatgccagccaaccaact
gtaaaatcatcacttagtagatcaactttagcagttctcggtcttgcgaatgaaactcat
gagcaacatttgtcatcttcgttacactcttctgacacaagttcttcagttcacggagca
actctgacgtga
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