Glycine max (soybean): 100790116
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Entry
100790116 CDS
T01710
Name
(RefSeq) exosome complex exonuclease RRP46 homolog
KO
K12590
exosome complex component RRP46
Organism
gmx
Glycine max (soybean)
Pathway
gmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100790116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100790116
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
100790116
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF6372
Motif
Other DBs
NCBI-GeneID:
100790116
NCBI-ProteinID:
XP_003545427
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Position
14:11891854..11894680
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AA seq
237 aa
AA seq
DB search
METDRPDSQTPNQLRPLACSCSCSILHRSHGSASWAQRETKVLAAVYGPKAGTKKNENPK
KASIKVIWKPKTGQIGKVEKEYEMILKRTLESICIRTIYPNTTTLVIVQIVHDDGVLLPC
AINAACVALVDARIPLKHLVVAICCSITDSGCIILDPTKDQEEKMKAFINLVFPNTIVSV
LPEGSLQEGSETMAHGIMTSITQGAMSGLGGFVACRALSQRNTDPTKASRPWDIAIL
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
atggagactgacagacctgacagccagactcccaatcaactgagacccctggcctgctcc
tgctcctgctccatcctacatcgatcccatggctcggccagttgggctcaacgtgaaact
aaagtgcttgctgcagtttacgggcccaaagctggaaccaagaagaacgaaaaccccaaa
aaagcatccattaaagttatttggaaaccgaagactggacaaattggaaaagtggagaag
gagtatgagatgatattgaaaagaactttggaaagcatctgcattcgaacaatatatccc
aacaccaccactttggttatagtccagattgtccacgatgatggtgttcttcttccatgt
gcaataaatgcagcatgcgttgcacttgtggatgcgagaattcccctaaaacatcttgtt
gtagcaatatgttgttctataacagacagtggttgtattatattggacccaaccaaagat
caagaggagaaaatgaaagcattcatcaatttagtttttccaaatacaattgtttctgtc
ctcccagagggatcactacaggagggtagtgagactatggcacatggaatcatgacatct
attacacagggtgctatgtcaggtttgggagggtttgtggcatgcagagcactctcacaa
aggaatactgatcctaccaaagcttcacgcccttgggacattgcaatactatag
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