KEGG   Glycine max (soybean): 100791764
Entry
100791764         CDS       T01710                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
gmx  Glycine max (soybean)
Pathway
gmx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gmx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100791764
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gmx03019]
    100791764
Messenger RNA biogenesis [BR:gmx03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     100791764
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_WDR19_1st Beta-prop_Aladin Beta-prop_IFT122_1st Beta-prop_EIPR1 Beta-prop_SCAP NBCH_WD40 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_TEP1_C eIF2A Beta-prop_SPT8 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_NUP159_NUP214 Beta-prop_DCAF12 Ge1_WD40 Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_WDR41 Cytochrom_D1 Beta-prop_VPS8 Beta-prop_WDR11_1st Nbas_N Beta-prop_WDR75_2nd CFAP43_N Beta-prop_pof12 Tricorn_2nd Beta-prop_WDR11_2nd PD40
Other DBs
NCBI-GeneID: 100791764
NCBI-ProteinID: XP_003551163
UniProt: I1MSD9
LinkDB
Position
17:complement(3958552..3961603)
AA seq 321 aa
MKLGGLKSVENAHDDSVWAVTWVPATANRPPLLLTGSLDETVRLWRSDDLVLDRTNTGHC
LGVASVAAHPLGSVAASSSLDSFVRVFDVDSNATIATLEAPPSEVWQMRFDPKGAILAVA
GGGSASVKLWDTSSWELVATLSIPRPEGQKPTDKSGSKKFVLSVAWSPDGKRLACGSMDG
TISVFDVPRAKFLHHLEGHFMPVRSLVYSPYDPRLLFTASDDGNVHMYDAEGKALIGTMS
GHASWVLCVDVSPDGAAIATGSSDRSVRLWDLNMRASVQTMSNHSDQVWGVAFRPPGGSD
VRGGRLASVSDDKSISLYDYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaagctgggtggactgaaatcggtggagaacgcgcacgatgattcggtgtgggcggtc
acctgggtacccgcaaccgccaaccgaccaccgctcctcctaaccggttccctcgacgag
accgtcaggctctggcgctccgacgacctcgttttggaccgcaccaacaccggccactgc
ctcggcgtcgcctccgtcgccgcccaccccctcggctctgtcgccgcctcctcctccctc
gacagcttcgtccgcgtcttcgatgtcgattccaacgccaccatcgccaccctcgaggct
cctccctctgaagtttggcaaatgcgcttcgatcccaagggtgccattctagcagttgct
ggcggaggtagtgcatctgtcaagctttgggacacttcctcatgggaacttgttgccact
ctgtcaattcctcgtccagaaggacagaagcccacagacaaaagtggcagcaaaaaattt
gtgctatcagttgcatggagtcctgatgggaaacgacttgcttgtggttcaatggatggc
accatttcagtttttgatgtgccccgcgccaaatttctgcatcaccttgaaggtcacttc
atgcctgtgcgatctcttgtttattctccttatgatccaaggctgctgtttacagcttcg
gatgatggaaacgtccacatgtatgatgctgagggaaaagctttaattgggaccatgtca
ggtcatgctagttgggtactgtgtgtggacgtcagcccagatggggcagccattgctaca
ggttcaagtgatagatctgtaaggctatgggatcttaacatgagggcatctgtgcagaca
atgagcaatcattcagaccaggtatggggagttgcatttagaccacctggagggagtgat
gtgcgaggtggtcgacttgctagtgtatcagatgacaagagcatatcactgtatgattat
tcctga

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