Glycine max (soybean): 100792410
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Entry
100792410 CDS
T01710
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100792410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100792410
03012 Translation factors [BR:
gmx03012
]
100792410
Enzymes [BR:
gmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100792410
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100792410
Translation factors [BR:
gmx03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
100792410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
AAA_19
nSTAND3
ATPase
ABC_tran
T2SSE
AAA_16
Motif
Other DBs
NCBI-GeneID:
100792410
NCBI-ProteinID:
XP_006585701
UniProt:
I1KVZ2
LinkDB
All DBs
Position
8:complement(18793202..18821014)
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AA seq
1161 aa
AA seq
DB search
MRNSKLCAASLLIARAKSLQLHHRHVRHCFPPFSSSSATSISLFRFHHPWLSSLCNAKSL
ITTRLFSSYYSLEQFSDDEYDCDFENQQASSTVANVDEWKWKLSMLLRSEKDQEIVSRDR
KDRRDYEQIANLAKRMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRV
EGLLQEYLDRLQLNSAKTTDSLDDVNSTNQVKDINMDENADSFVDESVMEKVLQKRSLRM
RNMQRAWQESPEGRKLLEFRKSLPSFKEKQGLLQAIAHNQVIVISGETGCGKTTQLPHYV
LESEVESGRGAFCSIICTQPRRISAMAVAERVSAERGEPLGETVGFKVRLEGMKGKNTHL
LFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSA
TLNAELFSNYFGGAPTFHIPGFTYPVRAHFLEDILEMTGYKLTSFNQIDDYGQEKLWKTQ
KQLAPRKRKNQITALVEDALSNSSFENYSSRARDSLTSWAPDCIGFNLIEAVLCHICRKE
RPGAVLVFMTGWEDISSLKDQLKAHPLVGDPNRVLLLTCHGSMATSEQKLIFEKPPPNIR
KVILATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGR
VQPGECYHLYPKCVYDAFSEYQLPELLRTPLNSLCLQIKSLQVESIGGFLSAALQAPEPR
AVQNAIDFLKMIGALDEQENLTNLGKFLSMLPVDPKLGKMLIMGAIFRCFDPVLTIVAGL
SVRDPFLLPQDKRDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLS
AQTLQAIHSLRKQFSFILKEAGLVDAEANVINKLSHNQSLVRAVICSGLFPGIASVVHRE
TSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFG
GALSNGIQAGHLKMLDGYVDFFMDPNLADSFLKLKEELNKLIQKKLEDPSIDIHKEGKYL
MLAVQELVSGDQCEGRFVFGRESRKPKASNDENKFTKDGTNPKSLLQTLLMRAGHSPPKY
KTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNQHEDDKSPP
DVTDNMLKLLGKRRKSKRGHG
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaattcaaagttgtgtgcagcgtctcttcttatagcacgggccaagtccctccaa
cttcaccaccgccacgtgcgtcactgcttccctccattttcttcttcttctgcaacctca
atctcactcttcaggtttcatcacccttggctctcttccttgtgcaacgcgaaatcactc
atcaccacgcgcctcttctccagctactactccctcgaacagttctccgatgacgaatac
gactgcgacttcgagaatcaacaggcatcgtctacagtggctaatgtggatgagtggaaa
tggaaactcagcatgttgttacgcagtgaaaaggatcaggagattgtatctagagacaga
aaagataggagggactatgaacagatagctaaccttgccaaaagaatggggctttacagt
gagttgtttggaaaagtggttgttgcaagcaaggtgcctcttcctaactaccgtccagat
ttggatgacaaacgtccacaaagagaggtggtgattccactaagcttgcaaaggagggtt
gagggtttgttgcaggaataccttgataggcttcagttgaattctgcaaagacaactgac
agcctagatgatgtgaattccaccaatcaagttaaagatataaacatggatgaaaatgct
gattcttttgtggatgaatctgttatggaaaaggttctccagaagaggagtttgaggatg
cgtaatatgcaaagagcttggcaggaatcacccgagggcaggaagttgctggaattccgg
aagtctctaccatcattcaaggagaagcaaggtttacttcaagctatagcacataatcag
gtgatagttatatctggagagactggctgtggtaaaaccactcaacttcctcactatgta
ttagaatcagaggttgagtctggtcgtggagcattttgtagcattatttgcacacagcct
cgaaggatctctgctatggcagtggcagagagagtgtcagctgagcgaggagagcctctt
ggtgaaacagttggcttcaaagttcgattagaaggaatgaaaggaaaaaacacccatctg
ctattttgtaccagtggtatattacttagaaggctgttgagtgatcgaaacctgaatggt
ataacccatgtttttgtggatgaaattcatgaaagaggcatgaatgaagacttcttactg
attgtgttaaaggatctgcttccacgtcgtcgggatttaagattggttttaatgagtgcc
accttgaatgctgagcttttttcgaattattttggaggtgctcctacatttcatattccg
ggtttcacttatccagttagagcacactttttagaagatattttggaaatgacgggatat
aaattgacttccttcaaccaaattgatgattacggtcaagagaaactgtggaagacacaa
aagcaactagcaccacggaagaggaaaaaccagatcactgctcttgttgaggacgctctt
tctaattcaagctttgagaactatagctccagggcacgtgattcactaacatcttgggca
cctgactgcattggttttaatctcattgaggctgttctatgccatatatgtcggaaggaa
cgaccaggtgctgtcttagtatttatgactgggtgggaggatataagctctttaaaagat
cagcttaaagcacatcctcttgtaggagatcccaatagggttctgcttctaacatgtcat
ggttcaatggcaacttcagaacagaaactcatatttgagaaaccacctccaaatataagg
aaagtgatacttgctacaaatatggctgaggcaagtattacaatcaatgacatagttttt
gtggttgattgtggaaaagcaaaagagaccacttatgatgctttaaataacacgccatgt
cttctaccttcttggatatcacaagcatctgcacgtcagagaagaggtagggctggtcgt
gtgcagccaggagaatgttaccacctttaccccaaatgtgtttatgatgccttttctgaa
tatcaacttcctgaactactgagaacacctttgaattctctatgcttgcaaataaaaagt
ttgcaggttgagagcataggagggttcttatcagcagctttacaggcaccagagccacgg
gctgttcaaaatgctattgattttctcaagatgattggagcattagatgaacaagaaaat
cttacgaatcttgggaagtttctctctatgcttcctgttgatcccaagcttggaaaaatg
ttaataatgggagctatatttcgatgctttgatcctgttcttacaatagttgctggcctt
agtgtcagggatccttttcttttgccccaagacaagagggatttagcagggacagcgaag
tctaggttttctgctaaagattacagtgatcatatggctcttgttcgagcatatgaagga
tggaaagatgcagaaagagaagggtcggcttacgagtactgctggaggaattttctatca
gcccaaactcttcaggctattcattcacttcggaaacagtttagctttatcttgaaagaa
gctggcttggtagatgcagaagctaacgtcattaacaaattgagtcacaatcaatctctt
gtgcgtgcagtcatatgttctgggctctttcctggcatagcatcagtggtgcacagggag
acatccatgtcatttaaaacaatggatgatggccaggttttattgtatgctaattcagtg
aatgcacgttaccagaccattccttacccttggttggtttttggtgagaaagtcaaggtc
aatgctgtttttatccgtgattccactggtgtatctgattcaatacttatcctttttggt
ggtgctctaagtaatgggatacaggctgggcatctgaaaatgttagatgggtatgttgac
ttcttcatggatcctaatttagctgacagctttttgaagcttaaggaagagctcaataag
cttatccaaaagaagctggaagatcctagcattgacattcacaaggaagggaaatacttg
atgcttgctgttcaggagctggtttcaggggatcaatgcgaaggaagatttgtatttggc
cgtgaaagccggaagcctaaggcctccaatgatgaaaacaaattcacaaaagatggaaca
aatcccaagagcttgctgcagactctgttgatgcgagcagggcactccccacccaaatac
aaaacgaaacatcttaagacaaatgagtttagggcattggtggagtttaagggaatgcaa
tttgttggcaaaccaaagagaaacaagcaacttgcagaaagggatgctgctatagaggca
ttggcttggttgactcacacctctgacaataaccagcatgaagatgataagtctcctcct
gatgtaactgacaacatgctaaaactcctagggaagcgtagaaaatcaaagcgaggccat
ggttga
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