Glycine max (soybean): 100793016
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Entry
100793016 CDS
T01710
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
gmx
Glycine max (soybean)
Pathway
gmx03022
Basal transcription factors
gmx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100793016
09124 Replication and repair
03420 Nucleotide excision repair
100793016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmx03021
]
100793016
03400 DNA repair and recombination proteins [BR:
gmx03400
]
100793016
Transcription machinery [BR:
gmx03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100793016
DNA repair and recombination proteins [BR:
gmx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100793016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
IBR
Tfb4
Motif
Other DBs
NCBI-GeneID:
100793016
NCBI-ProteinID:
XP_006590708
UniProt:
I1LHY4
LinkDB
All DBs
Position
11:5502941..5508033
Genome browser
AA seq
419 aa
AA seq
DB search
MNNVAERPLNKDVEDDDEDDGGGLEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQ
YRRRLRTLAATAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMVVMGKQVEAFIREFF
DQNPLSHVGLVTIKDGIAHCITELGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQ
IPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFVCKHLCEETGGT
YSVALDESHFKELILEHAPPPPAIAEYSTANLIKMGFPQRSAEGSVAICTCHEEAKTGGG
YTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVMFDEVTPSQKDSSRSFPNT
CFGCQQSLLSQGNKPGLSVICPKCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVTASQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaataatgttgctgaaagaccacttaacaaagatgtagaggatgatgatgaggatgat
ggtggaggcctcgaagcctgggagagaacttatgcagaggatagatcatgggaggctttg
caagaggatgaatccggacttcttcgccccatagatactacagccatttaccatgcccag
tatcgcaggcgcctccgtacccttgctgccacagcggctactgcacggattcagaagggg
cttatacgatacctgtacattgttgttgacctgtccaaggcagcttcagagagagacttt
cgaccaagtaggatggttgtgatggggaaacaagttgaggcatttatcagggaattcttt
gatcagaatccacttagtcatgttggtctggtgactataaaagatgggattgctcattgc
ataacagaacttggtggcagtcctgagtctcacattaaagctttgatgggtaaactggaa
tgctcaggtgatgcctccttacaaaacgcactagagcttgttcttggatatctaaatcaa
atcccatcatatggtcatcgagaagttctgatcttatattcggctctcagtacatgtgat
cctggtgatctcatggaaaccatccagaaatgcaaaaagagtaaaataaggtgctcagtc
attggtcttgcagctgaaatgtttgtgtgcaaacatctctgcgaggaaactggagggact
tattctgttgcactagatgagtcccactttaaagagttgatcctagagcatgcccctcca
cctccagcaatagcagagtattctactgctaatttaattaagatgggtttcccacagcga
tcagctgagggttctgtggcaatttgcacatgtcatgaagaggccaagaccggaggggga
tacacttgtccaagatgcaaagttcgggtctgtgagcttcccactgaatgtcgtgtgtgt
ggattgacccttatttcttcaccccatttggctaggtcatatcatcatttatttcctata
gtgatgtttgatgaggtcactccatctcaaaaggattcaagccgcagttttcccaatact
tgttttggttgtcaacaaagtcttcttagtcagggaaacaagcctggactttctgttatt
tgcccaaaatgtaagcaacaattctgccttgattgtgacatctacgttcatgagagctta
cataactgcccaggctgtgaaagttccagacattctaagtctgtaactgcttcccaatga
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