Glycine max (soybean): 100794796
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Entry
100794796 CDS
T01710
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gmx
Glycine max (soybean)
Pathway
gmx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100794796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gmx03021
]
100794796
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100794796
Transcription machinery [BR:
gmx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100794796
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
100794796
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
100794796
NCBI-ProteinID:
XP_006606037
UniProt:
K7N3F0
LinkDB
All DBs
Position
20:complement(38090700..38097152)
Genome browser
AA seq
937 aa
AA seq
DB search
MFSQNVILPPENPRPTAFASKPMSNEIAKPLPSILVGRFKALLKQRDDELRVAAGDPVPP
ASTDEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVPVDQKLP
SLYLLDSIVKNFGQEYIRYFSLRLPEVFCEAYRQIQPTLHSAMRHLFGTWSKVFPPSVLR
KIETELQFSQAVNTQSSTLNPVRASESSRPSHAIHVNPKYLRQLERSTVDSASKTHQFLS
SSSSLGISSSSPSRIGVDRPLSASMDEYAVDNSAVRLIERNSPHPAVDYGVAKALGRDVD
LTEWQQKQYPGDGRNRFPTSVTYSLSNGHQRQSPRALIDAYGSDKSQETSSSKPLLVERL
DRNGIDKVLSTSWQNTEEEEFDWENMSPTLTDHSRNNSLLPSTFGFSRERPGVAANATLS
EQDTRKGWSSGSQLPPVDDSSAIAEDAFASSTFRRTPPGQVPGSQNQINHSLGSSQPHDA
WKISHHPSNIFSNRGRARNLMIPPMDNIRNTDNNPYWVRPSMSRMEARPSVLPAPFEMRP
SVNVNVTRPPIINPINPLQKHVRSQFNAINTSNPIANHVNKSSFMPKQSFDSVENKDASI
SKIHQLPNQLPGVISSNQQNHGQAPQLQFFPSQDPSTSQFCHGSSLQGHGASISTAMSNP
LPVIPFPLPFQSIANNPLHLQGGAHPSLPPGRPPAPSQMIPHPNVGAYMSSQQPTVGYTN
LISSLMSQGVISLANQLPAQDSVGTEFNPDILKVRHESAVNALYGDLPRQCTTCGLRFKC
QEEHSSHMDWHVTKNRMSKTRKQKPSRKWFVSDRMWLSGAEALGTESAPGFLPTETIEER
KDDEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLNAPTGTTAGMDRTQLGP
IIHAKCRSESNMATSEDLGPDEKGADEEGSQRKRMRS
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgttctctcaaaacgtgattctccctcccgaaaaccctagacccacggcgttcgcttcc
aaacccatgagcaatgagatcgcgaagcctctgccgtcgattctcgttggccgcttcaag
gctctactcaagcagcgcgacgacgaactccgagtcgccgccggcgaccccgtaccgccg
gcgtccaccgacgaaatcgtccagatttacgaactcctcttgtcggaactcacgtgcaat
ctgaaacctatcatcaccgatctcacaattattgccgaacagcagagggagcacgcaaaa
ggcatcgctgacgcaatttgcgctcggattctcgaggtgccagtagatcaaaagcttcct
tcactctatctgttggacagtattgtgaagaattttgggcaggaatacattagatacttc
tctttacgtcttcctgaagttttctgtgaggcgtacaggcagattcagcctactttgcat
tctgctatgcgccatctttttggtacttggtcaaaagtctttccaccttcagtcctgcgc
aagattgaaactgagttgcaattttctcaagcagttaatactcaatcatcaaccctgaat
cctgtcagggcttctgaatcatctcgaccaagccacgccatacatgttaatccaaaatac
ttgcggcagttggagcgctcaactgtggatagtgctagtaagacacatcaatttttatca
agcagtagcagccttggaatatcctcgtcgtccccttcaagaattggagttgataggcct
ttgtctgcatctatggatgaatatgcagtggacaattctgctgtcaggttaattgagaga
aactcgcctcatcctgctgttgattatggagtagccaaagcattaggtagagatgtggat
ttgactgaatggcagcaaaagcagtatcctggtgatggtcgtaatcgatttccaacttct
gttacatacagccttagtaatggacatcagcggcaaagtccaagagctttaattgatgca
tacggcagtgacaaaagccaagaaacttcaagcagtaagcctttgttagttgaacgtctg
gatagaaatggtatagacaaagtgttgtcaacatcttggcagaatactgaagaggaggag
tttgactgggaaaatatgagtccaaccttaacagaccatagtaggaataacagtttattg
ccttcaacttttggtttctctagggaaaggcctggtgttgcagctaatgcaactttgtcg
gagcaagatactaggaaggggtggtctagtggatctcagcttcctccagtagatgattct
tctgccatagcagaagatgcatttgcctcttcgacttttcgtcgcacacccccgggtcag
gtacctggatcccaaaatcaaatcaatcatagcctgggctcctctcaacctcatgatgct
tggaagatttcacatcatccgtctaacatttttagtaatagggggcgagcaaggaatctt
atgatccctcctatggacaacattcgcaatacagataataacccgtattgggttcgacca
tcaatgtcgaggatggaagctcggccatcagttttgccagcaccttttgaaatgaggcct
tctgtaaatgtgaatgtaactagaccgcccatcataaatccaataaatccattgcaaaaa
catgttaggagtcagttcaatgcaataaatactagtaatcctattgcaaaccatgtaaat
aaatcttcatttatgccaaaacagtcatttgacagtgttgagaacaaggatgcaagtatt
tcaaagatacatcagttgcctaatcagcttcctggagtaatttcttcaaaccagcaaaat
catgggcaggcaccacaactacagttttttccatctcaggatccatcaacctcacaattt
tgtcatgggagttcattgcagggacatggtgcttctataagtacagccatgtcaaatccc
ttaccagttataccattccctttaccatttcaaagtattgcaaataaccctttacattta
cagggtggagcccatccatctttacctccaggtcgccctcctgctccatctcaaatgata
cctcatccaaatgttggtgcatatatgtcaagccaacagccaactgttggatatactaat
ttaattagttctctaatgtcgcaaggtgtgatctcattggctaaccagctgcctgcacag
gattctgttggaactgagtttaatccagatattctgaaggttcgtcatgagtctgcagtc
aatgccttatatggtgatctccctagacaatgcacaacttgtgggctgagattcaaatgc
caagaggaacacagtagtcatatggattggcatgtgactaagaatcggatgtctaaaacc
cgtaagcagaaaccctctcggaagtggtttgttagtgacaggatgtggctcagtggtgca
gaggcattgggaacagaatcagctccaggttttttgccaacagaaaccatagaagaaagg
aaagatgatgaagagttggcagtgcctgcagaagaagaccagaatacatgtgcattatgc
ggagagccttttgatgagttttacagtgatgaaatggaggaatggatgtatcgaggagca
gtatacctcaatgcacctacgggaacaacagcaggcatggataggactcagttaggcccc
ataattcatgctaaatgcagatcagaatctaatatggccacctctgaagatcttggacca
gatgaaaagggtgccgatgaagagggttcccaaaggaaacgaatgcgaagttga
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