Glycine max (soybean): 100795376
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Entry
100795376 CDS
T01710
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X8
KO
K14328
regulator of nonsense transcripts 3
Organism
gmx
Glycine max (soybean)
Pathway
gmx03013
Nucleocytoplasmic transport
gmx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100795376
03015 mRNA surveillance pathway
100795376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100795376
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100795376
mRNA cycle factors
P-body specific factors
100795376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
DUF6980
Motif
Other DBs
NCBI-GeneID:
100795376
NCBI-ProteinID:
XP_003527584
UniProt:
I1KFZ1
LinkDB
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Position
6:50754413..50763849
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AA seq
529 aa
AA seq
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MVMEKKMKVRSEREKTKVVIRHLPPSLSQSDLSQHIDSHFASRYNWFSFRPGNNSHTRQR
HSRAYIDFKCPDDVFEFAEFFDGHVFVNERGAQHKVIVEYAPSQRVPKPSAKKDGREGTI
YKDPDYLEFLKLIAKPQEHLPSAEVQLERKEAEQAGANKETRIVTPLMEFVRQRRAVDSG
MQASSAVAKVSRRSRAALPGKPGSGNTKRGSEKKKYVQKDNAKGVARKESKDKSAFVVVP
RRDNQSAESMHGIEGPFSGISLTSDSGKKKILLLKGKQREIPSAIEGTVKQQNIQSGNSP
ISAPAKQNQRREASGRLIRSILLNNESRQSLSTTGAQHKIQILSSENGKRPPRTFGSRSG
LNDQVSNNDAAQVNSEGDSKMALDKKFVKRDLHGLGSGEKTEKRTRNKDRPDRGVWTPLR
RSDVSNAGNDHSSSSLAQPTQSNPESAEGEVKENVPSGNRGGEFSASAGGRGNPSIENDS
QRNFTRRGASYIVKDDGAVSISEGKPSKKSVGHSAHEKQVWVQKSSSGS
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggtgatggaaaagaagatgaaggtccgttcggaaagggaaaagacgaaagttgtgatt
aggcatttgcccccttctctctctcaatccgatctctcccaacacatcgattctcacttc
gcttctcgctacaattggttctctttccgtcccggcaacaacagtcacactcgtcagagg
cattcccgtgcctatatagacttcaagtgtcccgatgacgttttcgagttcgccgagttc
tttgatggacacgtttttgttaacgagcgaggtgcccagcataaagttatagttgagtac
gctccttctcagcgtgttccaaagcctagtgccaaaaaggatggacgtgaagggactata
tacaaagatccagactatcttgagttcctcaaactaattgcaaagcctcaagagcatctt
cctagtgcagaggtacaattggaaagaaaagaagctgagcaagctggggctaacaaggaa
acacgaattgtcacacccctgatggaatttgttcgtcagagacgtgctgttgacagtggt
atgcaggcttcatcagcggtggcaaaagttagcagaagatccagagctgctttgcctggc
aagcctggctcaggcaatactaaacgaggatctgaaaagaaaaagtatgttcagaaggac
aatgccaagggtgttgctcgcaaagagtcaaaagacaagtcagcctttgttgtggtcccc
cggcgagacaatcaatcagctgaatcaatgcatggtattgaaggtcccttttctggaatt
tcactgacttctgactcaggaaagaaaaaaatccttcttcttaaagggaaacagcgggaa
attcccagtgctattgagggcacagtaaaacagcaaaacatacaatctggaaattctcct
atttctgctcctgcaaaacagaaccagagacgtgaagctagtggaagattgattaggagc
atacttctaaataatgaatctcgtcagagtctgtctacaactggtgcccaacataaaatt
caaattttaagttctgaaaatgggaagcgaccccctcgtacttttggctcaaggtctggg
ttaaatgatcaagtctcgaataatgatgctgcacaagttaattctgaaggggattccaaa
atggcattggacaaaaagttcgtaaaaagggatctgcatggtttgggtagcggtgagaaa
acagaaaaacgtactagaaacaaggatagacctgatcgtggtgtttggacaccccttcgc
cgttctgatgtttcaaatgctggtaatgaccattcatcatcctcattggcacagcctact
cagtcaaatcctgaatctgctgaaggagaagtaaaagaaaatgttccttctggaaacagg
ggaggcgaattctctgcttctgcaggtggacgtgggaatccttccattgagaatgattct
cagagaaattttactcgccgtggcgcttcctatatagtgaaggatgatggtgcagtcagt
ataagtgaagggaaaccttccaagaaaagtgttgggcatagcgctcacgagaagcaagtc
tgggttcagaaatcttcttcagggtcataa
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