| Entry |
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| Name |
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF2
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| KO |
| K14327 | regulator of nonsense transcripts 2 |
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| Organism |
gmx Glycine max (soybean)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:gmx00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100795746
03015 mRNA surveillance pathway
100795746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:gmx03019]
100795746
Messenger RNA biogenesis [BR:gmx03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100795746
mRNA cycle factors
P-body specific factors
100795746
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
15:22238283..22254150
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| AA seq |
1187 aa
MDHHEDESNSKQDDEEAVARLEEIKKSIEAKLALRQSNLNPERPDSGFLRTLDSSIKRNT
AVIKKLKQINEEQREALMDELRSVNLSKFVSEAVAAICDAKLRSSDIQAAVQICSLLHQR
YKDFAPSLVQGLLKVFSPGKPGDESDTDRNLKAMKKRSSLKLLLELFFVGVIEDGGIFIN
IIKDLSSGEQLKDRDAAQTSLTLLSSFARQGRIFLGLSVSGPEIHEEFFKGLNITADQKK
VFRKACYSFYDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDHLY
RNVASLAEALDMQPPVMPEDGHTTRVTSGEDGVSSASGKDSSVVEPIWDDEDTRTFYECL
PDLRAFVPAVLLGETEPKSSEQSAKNQDLTTEILPESDKGQQTTHESGEVSTESNALPEA
ESTERVKDKEEKDKSNELDREKEKEKDNDKKGENEKDKLRSLEGTNLDALLQRLPGCVSR
DLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTSMKDVSSILLQ
MLEEEFNFLINKKDQMNIESKIRNIRFIGELCKFKIAPPGLVFSCLKACLDDFTHHNIDV
ACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSA
RVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWNECEPYLLKCFMKVYKGKYGQI
HLIASLAAGLSRYHDEFAVAIVDEVLEEIRVGLELNDYGMQQRRIAYMRFLGELYNYEHV
DSSVIFETLYLILIHGHGTSEQDVLDPPEDCFRMRLIITLLETCGHYFDRGSSKRKLDRF
LIHFQRYILSKGTLPLDIEFDLQDLFVDLRPNMVRYTSIEEVNAALVELEEHDRIVSADK
VSSEKHSGTEKPLIRTTSTTAVVGNGQSIDNGTEENEVQDDNDSETDSGSDTIDVEGHDE
ELDEENHDDGCETEDDDDDDDDGPGPASDEEDEVHVRQKVTEVDPLEEANFDQELKAVVQ
ESMEQRRQELRGRPTLNMMIPMNVFEGSAKDHHGRGVGGESGDEALDEDTGGNKEVQVRV
LVKRGNKQQTKQMFXPRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEEHNGLGTQ
PTNWMQSVGYKGGGRGSTLEGNSGRGSGSRHRHHNYSGSGIYYSRRK |
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| NT seq |
3564 nt +upstreamnt +downstreamnt
atggatcaccacgaggatgaaagtaacagcaaacaagacgatgaggaagctgttgctcgc
cttgaggaaataaaaaaatctattgaggcgaagctggctttacggcaaagcaatttgaat
ccagaaaggcctgattcaggatttttaaggacattggattctagcattaagcgcaacact
gctgttattaagaaactgaagcagattaatgaagagcagcgtgaagctctgatggacgag
ttgcgaagtgtcaacttaagcaaatttgtcagtgaagctgtggctgctatatgtgatgcc
aagcttagaagttctgatatacaagctgcagttcagatctgttctttgcttcatcaaagg
tacaaggactttgcaccaagcctggttcaagggcttctcaaagtcttctctcctggaaaa
cctggtgatgaatcagatacagacagaaatttgaaggcaatgaagaagcgcagctctcta
aagcttctattggaacttttttttgttggagttattgaagatggtgggatttttatcaat
atcataaaagatcttagcagtggggaacagctaaaagatcgggatgctgcacaaacaagt
ttgacccttctttcgagttttgctcgccaagggagaatttttctaggactttctgttagt
gggccggaaattcatgaggagttttttaaaggccttaacatcacagcagatcagaagaaa
gttttccggaaagcatgctattccttttatgatgctgcagctgaactacttcagtctgag
cattcttcacttcgcttaatggagcatgaaaattctaagattttgaatgcaaaaggagag
ctcagtgatgaaaatattgcttcatatgaaaagcttcgtaaatcctatgaccatctgtac
cgtaatgttgcatcattagcagaagcacttgatatgcagcctcctgtaatgccagaggat
ggccacacaactagggttaccagtggtgaggatggagtttcttctgcttctggtaaagat
tcttctgttgttgaacccatatgggatgatgaagatacaaggactttctatgaatgttta
cctgatcttagagcttttgttcctgctgtgcttttgggagaaacggagccaaaaagcagc
gagcaatctgcgaagaatcaagacctaacaactgaaatattacctgaatcagacaaaggt
caacagaccactcatgaaagtggagaggtctctacagagtctaatgctttgccagaggca
gaaagcacagaaagagtgaaggataaggaggaaaaagacaagtctaacgaattggacaga
gagaaggaaaaagaaaaagataatgacaaaaagggagaaaatgaaaaagacaaactcaga
agtcttgaagggacaaatttggatgctctactgcagaggcttccgggttgtgtgagccga
gaccttattgatcaattaactgtggagttctgttatctaaattcaaaatcaaatcggaaa
aagcttgtgagggctttgttcaatgtaccaaggacatctctggagctgttaccatattat
tcccgcatggttgccacactctcaacttctatgaaggatgtctcctccattcttttgcag
atgttggaggaggaattcaacttcttaataaataaaaaggatcagatgaacattgagtcc
aagataaggaacatcaggttcattggagaactttgcaagttcaaaattgcccctcctggc
ctagtcttcagctgtttgaaggcctgtttagatgattttacacatcacaacattgatgta
gcttgcaatcttcttgaaacatgtggccgttttctgtatcggtctccagaaactactata
cgcatggctaacatgttggagatattgatgcgcttgaaaaatgtaaaaaacttggatccg
agacatagcactttggtggagaatgcatactacctctgcaaaccaccagaaagatccgca
cgagtagctaaagttcgtcctccattgcatcagtatatcagaaaattacttttctctgat
cttgataagtctaccattgagcatgtgctgaggcaactccgtaaattaccatggaatgaa
tgtgaaccatatcttttgaaatgcttcatgaaggtctacaaaggaaaatatggtcagatc
cacctgattgcatctcttgctgctggattaagtcgctatcatgatgagtttgctgtagct
atcgttgatgaggttctggaggagattagagttgggcttgagttaaatgactatgggatg
cagcaaagacgcattgcttacatgcgattcttaggggagctatacaactatgaacatgta
gactcatctgttatttttgagacactatatctcattctcatccatggccatgggacatca
gagcaagatgtactggatccacctgaagattgttttcgcatgaggttgatcattactctg
cttgaaacttgtgggcattactttgatcgtggctcttctaagaggaaacttgatcgattc
ctaatacacttccagaggtatattttaagcaaagggacactgcctctggacattgaattt
gacttacaggatctgtttgtggacttgcgtcccaatatggttcgttacacttctatcgag
gaagtgaatgcagctctagtagaactcgaggaacatgatcggattgtttctgctgataag
gtcagcagtgaaaaacattctggcactgagaagcctttaattaggaccacttccactact
gcagtggttggcaatggacaaagcattgataatggtacggaagaaaatgaagtgcaagat
gataatgacagtgagactgattcagggagtgacacaattgatgtggagggacatgatgaa
gagttggatgaggagaatcatgatgatgggtgtgagactgaggatgatgatgatgatgat
gatgatgggcctggaccagcttctgacgaggaggatgaagtccatgtgagacaaaaagtg
accgaggtggaccctctggaagaagccaatttcgatcaggagctcaaggctgtagtacag
gagagtatggaacagcgaaggcaggagctacgaggtcgtcctacattgaacatgatgatt
ccaatgaatgtatttgagggatctgccaaggatcaccatgggaggggagttggtggggaa
agtggtgatgaggccctggatgaggatactggaggaaacaaagaggttcaggtgagagtt
cttgtgaagcggggaaacaagcagcaaacaaagcagatgttcnatccacggaattcctca
ctggtgcagagtacaaaacagaaagaagcagcggagcttcaagagaaagaagacatcaag
aggcttgtcttggagtataatgatagagaagaggaggagcataatggattagggacccag
ccaacaaactggatgcagagtgtaggttacaaaggtggtggccgtggcagcactttggaa
ggaaacagtggcaggggtagtggatcaagacatcggcatcataattattctggcagtgga
atctattacagtagaagaaagtga |
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