Glycine max (soybean): 100795746
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Entry
100795746 CDS
T01710
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
gmx
Glycine max (soybean)
Pathway
gmx03013
Nucleocytoplasmic transport
gmx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100795746
03015 mRNA surveillance pathway
100795746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100795746
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100795746
mRNA cycle factors
P-body specific factors
100795746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
100795746
NCBI-ProteinID:
XP_003546565
UniProt:
I1MHT6
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All DBs
Position
15:22238283..22254150
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AA seq
1187 aa
AA seq
DB search
MDHHEDESNSKQDDEEAVARLEEIKKSIEAKLALRQSNLNPERPDSGFLRTLDSSIKRNT
AVIKKLKQINEEQREALMDELRSVNLSKFVSEAVAAICDAKLRSSDIQAAVQICSLLHQR
YKDFAPSLVQGLLKVFSPGKPGDESDTDRNLKAMKKRSSLKLLLELFFVGVIEDGGIFIN
IIKDLSSGEQLKDRDAAQTSLTLLSSFARQGRIFLGLSVSGPEIHEEFFKGLNITADQKK
VFRKACYSFYDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDHLY
RNVASLAEALDMQPPVMPEDGHTTRVTSGEDGVSSASGKDSSVVEPIWDDEDTRTFYECL
PDLRAFVPAVLLGETEPKSSEQSAKNQDLTTEILPESDKGQQTTHESGEVSTESNALPEA
ESTERVKDKEEKDKSNELDREKEKEKDNDKKGENEKDKLRSLEGTNLDALLQRLPGCVSR
DLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTSMKDVSSILLQ
MLEEEFNFLINKKDQMNIESKIRNIRFIGELCKFKIAPPGLVFSCLKACLDDFTHHNIDV
ACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSA
RVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWNECEPYLLKCFMKVYKGKYGQI
HLIASLAAGLSRYHDEFAVAIVDEVLEEIRVGLELNDYGMQQRRIAYMRFLGELYNYEHV
DSSVIFETLYLILIHGHGTSEQDVLDPPEDCFRMRLIITLLETCGHYFDRGSSKRKLDRF
LIHFQRYILSKGTLPLDIEFDLQDLFVDLRPNMVRYTSIEEVNAALVELEEHDRIVSADK
VSSEKHSGTEKPLIRTTSTTAVVGNGQSIDNGTEENEVQDDNDSETDSGSDTIDVEGHDE
ELDEENHDDGCETEDDDDDDDDGPGPASDEEDEVHVRQKVTEVDPLEEANFDQELKAVVQ
ESMEQRRQELRGRPTLNMMIPMNVFEGSAKDHHGRGVGGESGDEALDEDTGGNKEVQVRV
LVKRGNKQQTKQMFXPRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEEHNGLGTQ
PTNWMQSVGYKGGGRGSTLEGNSGRGSGSRHRHHNYSGSGIYYSRRK
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccacgaggatgaaagtaacagcaaacaagacgatgaggaagctgttgctcgc
cttgaggaaataaaaaaatctattgaggcgaagctggctttacggcaaagcaatttgaat
ccagaaaggcctgattcaggatttttaaggacattggattctagcattaagcgcaacact
gctgttattaagaaactgaagcagattaatgaagagcagcgtgaagctctgatggacgag
ttgcgaagtgtcaacttaagcaaatttgtcagtgaagctgtggctgctatatgtgatgcc
aagcttagaagttctgatatacaagctgcagttcagatctgttctttgcttcatcaaagg
tacaaggactttgcaccaagcctggttcaagggcttctcaaagtcttctctcctggaaaa
cctggtgatgaatcagatacagacagaaatttgaaggcaatgaagaagcgcagctctcta
aagcttctattggaacttttttttgttggagttattgaagatggtgggatttttatcaat
atcataaaagatcttagcagtggggaacagctaaaagatcgggatgctgcacaaacaagt
ttgacccttctttcgagttttgctcgccaagggagaatttttctaggactttctgttagt
gggccggaaattcatgaggagttttttaaaggccttaacatcacagcagatcagaagaaa
gttttccggaaagcatgctattccttttatgatgctgcagctgaactacttcagtctgag
cattcttcacttcgcttaatggagcatgaaaattctaagattttgaatgcaaaaggagag
ctcagtgatgaaaatattgcttcatatgaaaagcttcgtaaatcctatgaccatctgtac
cgtaatgttgcatcattagcagaagcacttgatatgcagcctcctgtaatgccagaggat
ggccacacaactagggttaccagtggtgaggatggagtttcttctgcttctggtaaagat
tcttctgttgttgaacccatatgggatgatgaagatacaaggactttctatgaatgttta
cctgatcttagagcttttgttcctgctgtgcttttgggagaaacggagccaaaaagcagc
gagcaatctgcgaagaatcaagacctaacaactgaaatattacctgaatcagacaaaggt
caacagaccactcatgaaagtggagaggtctctacagagtctaatgctttgccagaggca
gaaagcacagaaagagtgaaggataaggaggaaaaagacaagtctaacgaattggacaga
gagaaggaaaaagaaaaagataatgacaaaaagggagaaaatgaaaaagacaaactcaga
agtcttgaagggacaaatttggatgctctactgcagaggcttccgggttgtgtgagccga
gaccttattgatcaattaactgtggagttctgttatctaaattcaaaatcaaatcggaaa
aagcttgtgagggctttgttcaatgtaccaaggacatctctggagctgttaccatattat
tcccgcatggttgccacactctcaacttctatgaaggatgtctcctccattcttttgcag
atgttggaggaggaattcaacttcttaataaataaaaaggatcagatgaacattgagtcc
aagataaggaacatcaggttcattggagaactttgcaagttcaaaattgcccctcctggc
ctagtcttcagctgtttgaaggcctgtttagatgattttacacatcacaacattgatgta
gcttgcaatcttcttgaaacatgtggccgttttctgtatcggtctccagaaactactata
cgcatggctaacatgttggagatattgatgcgcttgaaaaatgtaaaaaacttggatccg
agacatagcactttggtggagaatgcatactacctctgcaaaccaccagaaagatccgca
cgagtagctaaagttcgtcctccattgcatcagtatatcagaaaattacttttctctgat
cttgataagtctaccattgagcatgtgctgaggcaactccgtaaattaccatggaatgaa
tgtgaaccatatcttttgaaatgcttcatgaaggtctacaaaggaaaatatggtcagatc
cacctgattgcatctcttgctgctggattaagtcgctatcatgatgagtttgctgtagct
atcgttgatgaggttctggaggagattagagttgggcttgagttaaatgactatgggatg
cagcaaagacgcattgcttacatgcgattcttaggggagctatacaactatgaacatgta
gactcatctgttatttttgagacactatatctcattctcatccatggccatgggacatca
gagcaagatgtactggatccacctgaagattgttttcgcatgaggttgatcattactctg
cttgaaacttgtgggcattactttgatcgtggctcttctaagaggaaacttgatcgattc
ctaatacacttccagaggtatattttaagcaaagggacactgcctctggacattgaattt
gacttacaggatctgtttgtggacttgcgtcccaatatggttcgttacacttctatcgag
gaagtgaatgcagctctagtagaactcgaggaacatgatcggattgtttctgctgataag
gtcagcagtgaaaaacattctggcactgagaagcctttaattaggaccacttccactact
gcagtggttggcaatggacaaagcattgataatggtacggaagaaaatgaagtgcaagat
gataatgacagtgagactgattcagggagtgacacaattgatgtggagggacatgatgaa
gagttggatgaggagaatcatgatgatgggtgtgagactgaggatgatgatgatgatgat
gatgatgggcctggaccagcttctgacgaggaggatgaagtccatgtgagacaaaaagtg
accgaggtggaccctctggaagaagccaatttcgatcaggagctcaaggctgtagtacag
gagagtatggaacagcgaaggcaggagctacgaggtcgtcctacattgaacatgatgatt
ccaatgaatgtatttgagggatctgccaaggatcaccatgggaggggagttggtggggaa
agtggtgatgaggccctggatgaggatactggaggaaacaaagaggttcaggtgagagtt
cttgtgaagcggggaaacaagcagcaaacaaagcagatgttcnatccacggaattcctca
ctggtgcagagtacaaaacagaaagaagcagcggagcttcaagagaaagaagacatcaag
aggcttgtcttggagtataatgatagagaagaggaggagcataatggattagggacccag
ccaacaaactggatgcagagtgtaggttacaaaggtggtggccgtggcagcactttggaa
ggaaacagtggcaggggtagtggatcaagacatcggcatcataattattctggcagtgga
atctattacagtagaagaaagtga
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integrated database retrieval system
