Glycine max (soybean): 100796232
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Entry
100796232 CDS
T01710
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03013
Nucleocytoplasmic transport
gmx03015
mRNA surveillance pathway
gmx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100796232
09122 Translation
03013 Nucleocytoplasmic transport
100796232
03015 mRNA surveillance pathway
100796232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100796232
03041 Spliceosome [BR:
gmx03041
]
100796232
Enzymes [BR:
gmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100796232
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100796232
Spliceosome [BR:
gmx03041
]
Complex C
Other components
EJC/TREX
100796232
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100796232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
100796232
NCBI-ProteinID:
XP_003526412
UniProt:
A0A0R0JKX7
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All DBs
Position
6:5273335..5278719
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AA seq
427 aa
AA seq
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MGETKDEAYEEELLDYEEEDEKAPDSAGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILAL
TRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaaaggacgaagcatacgaggaagagcttctcgattacgaggaggaagac
gaaaaggcccccgactccgccggagctaaagtcaacggcgaagctaccaagaagggctat
gttggaattcacagttcgggattcagggacttccttctgaagccagagcttcttcgggct
attgtggactcgggatttgagcatccatctgaagtgcaacatgagtgcataccacaagca
attctcgggatggatgtaatttgtcaagcaaaatctggaatgggaaagactgctgtcttt
gttctctctactctgcagcagattgatcctgttcctggccaagtttctgcactggttctt
tgtcatacaagagaattggcataccagatatgccatgagtttgagaggtttagcacttac
ttacccgatctcaaggttgctgtcttttatggtggagtcaacatcaaagttcacaaggat
ctgctgaaaaatgagtgccctcatattgttgttggaacaccgggaagaatactagcattg
actagggataaggacctttctttaaagaatgttagacatttcatattggatgaatgcgac
aagatgctggaatcactggatatgaggaaagatgttcaagacattttcaagatgactccc
catgataagcaagttatgatgttctcagcaacactcagcaaggaaattcgcccagtctgc
aagaaatttatgcaagatcctatggaaatttatgttgatgatgaggccaagttgaccctt
cacgggcttgtgcagcactacatcaaattgaaagaggaagaaaaaaaccggaagttgaat
gatcttcttgatgcactggactttaatcaagttgtgatctttgtgaaaagtgttagcaga
gcagctgagctggacaaactacttgtggagtgcaactttccatctatatgcattcattct
ggcatgtcccaggaagaaaggttaaagcgctataaaggtttcaaggaggggcatacaagg
attcttgttgcaacagatttggttggaagagggattgatattgaacgtgtcaacattgtt
ataaactatgacatgcctgattctgctgacacatacttacacagggttggtcgagctgga
agatttggcaccaaaggccttgcaatcacatttgtttcctgttctactgatgttgatgtt
ctcaacaatgttcagtcaaggtttgaggtggatataaagcaacttcctgagcagatcgat
acctctacctatatgccatcgtag
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