Glycine max (soybean): 100799082
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Entry
100799082 CDS
T01710
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03013
Nucleocytoplasmic transport
gmx03015
mRNA surveillance pathway
gmx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100799082
09122 Translation
03013 Nucleocytoplasmic transport
100799082
03015 mRNA surveillance pathway
100799082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100799082
03041 Spliceosome [BR:
gmx03041
]
100799082
Enzymes [BR:
gmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100799082
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100799082
Spliceosome [BR:
gmx03041
]
Complex C
Other components
EJC/TREX
100799082
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100799082
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
100799082
NCBI-ProteinID:
XP_003528338
UniProt:
A0A0R0J4W7
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All DBs
Position
7:2489784..2495159
Genome browser
AA seq
426 aa
AA seq
DB search
MGELKDTEAYEEELIDYEEEEEKAPDSAKPVAESGKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLC
HTRELAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALA
RDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLQETEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDT
STYMPN
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggagaattgaaagacactgaggcttacgaggaagagctcatcgactacgaagaggaa
gaagaaaaagctcccgattctgctaaacccgttgctgaatctggcaagaagggttatgtt
ggcatccatagttcgggatttcgagacttcctgttgaaaccagagcttcttcgagccatt
gtggattcaggatttgagcatccttcagaagtgcaacatgaatgcatccctcaagcaatc
ttaggaatggatgtcatttgccaagcgaaatctgggatgggaaagactgctgtttttgtt
ctgtcaacacttcagcaagttgatcctgttcctggtcaagttgcagctcttgttctttgc
cacacaagagaactggcttatcagatttgccatgaatttgagaggttcagcacatatctt
cctgatataaaggctgctgttttctatggtggtgtcaacatcaaggttcacaaagaattg
ctcaagaatgaatgcccacatattgttgttggaacacctgggaggattcttgctctggct
agagataaggaccttggtttaaagaatgtgaggcattttatacttgatgagtgtgacaag
atgctcgaatcacttgatatgagaagagatgtgcaagagatcttcaaattgactccccac
gataagcaagtgatgatgttttcagctacactcagtaaagagatccgacctgtttgcaag
aaatttatgcaagatcccatggaaatttatgtcgatgatgaggccaaattgactcttcat
ggtcttgtccagcactatatcaaattgcaagagacagaaaagaatcgtaaattgaatgat
cttctcgatgctctggacttcaaccaagttgttatatttgtcaaaagtgtaagcagagct
gctgagttgaacaagttgcttgtggagtgtaacttcccatctatctgcatacattctgca
atgtcacaggaagagagattgaaacgatacaagggcttcaaagaagggaagcaaaggatt
cttgtggcaacagatttagtaggaagggggattgacatagaacgtgttaatatagttatt
aactatgacatgcctgattctgctgatacttacttgcacagggtgggaagagctggtaga
tttggcacgaagggtcttgcaattacttttgtgtcttctactgctgactctgaggttctt
aatcaggtgcaatctaggtttgaggttgacataaaggagcttcctgaacaaattgacact
tcgacatatatgccaaactga
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