Glycine max (soybean): 100800020
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Entry
100800020 CDS
T01710
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03013
Nucleocytoplasmic transport
gmx03015
mRNA surveillance pathway
gmx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100800020
09122 Translation
03013 Nucleocytoplasmic transport
100800020
03015 mRNA surveillance pathway
100800020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100800020
03041 Spliceosome [BR:
gmx03041
]
100800020
03009 Ribosome biogenesis [BR:
gmx03009
]
100800020
03012 Translation factors [BR:
gmx03012
]
100800020
Enzymes [BR:
gmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100800020
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100800020
mRNA cycle factors
Stress granule specific factors
100800020
Spliceosome [BR:
gmx03041
]
Complex C
Other components
EJC/TREX
100800020
Ribosome biogenesis [BR:
gmx03009
]
Eukaryotic type
90S particles
Helicases
100800020
Translation factors [BR:
gmx03012
]
Eukaryotic type
Initiation factors
eIF-4
100800020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
TniB
Motif
Other DBs
NCBI-GeneID:
100800020
NCBI-ProteinID:
XP_003533706
UniProt:
I1L171
LinkDB
All DBs
Position
9:complement(4567821..4571807)
Genome browser
AA seq
407 aa
AA seq
DB search
MATTSVVPANRRRAAANPAEDMDFETTEGVKAIASFEEMGIKDDLLRGIYQYGFEKPSAI
QQRAVTPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQALILSPTRELASQTEK
VILAIGDFINIQAHACVGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKML
VLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEMTNKFMTDPVRILVKRD
ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTV
SSMHGDMPQKERDAIMGEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR
IGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgacgtcggtggtgccggcgaatcggcggcgtgcggcggcgaaccccgccgag
gatatggacttcgagacgacggagggcgtgaaggccatcgcgagcttcgaggagatgggg
atcaaggacgatctgctccgcggaatctaccagtacggcttcgagaagccctcagccatt
cagcagcgggccgtgactccgatcattcagggccgtgacgtcatcgcccaggcccaatcc
ggaacgggcaaaacctccatgattgctctcaccgtttgccaggtcgtcgatacctccgtc
agagaggttcaggctttaatattgtcaccaacgagggaactggcctcgcaaactgagaag
gttatattggctattggggatttcatcaatatacaagctcatgcatgcgttggaggtaaa
agtgtgggagaagacataaggaaacttgagtatggagttcatgtggtgtctggaactcct
ggccgagtttgtgacatgatcaaaaggagaacattacgcacaagggctatcaagatgcta
gttcttgatgaatctgatgaaatgttgagcagagggtttaaagatcaaatttatgatgtg
tatagatatctcccacctgaccttcaggtttgtttgatttctgctacccttcctcatgaa
atactggagatgacaaacaagttcatgacagatcctgtaaggatccttgtaaaacgtgat
gaattgacattggagggcatcaagcaattttttgttgcggtcgaaagggaggaatggaag
tttgataccctgtgtgatctttatgataccctcactatcactcaagctgttatattctgt
aatactaagcgaaaggtggactggttaactgaaaaaatgcgtaacaacaatttcactgtc
tcatcaatgcacggtgacatgcctcagaaagaaagagatgctattatgggagaatttcgt
gctggaacaacccgtgtgctaataacaactgacgtttgggcccgtggtcttgatgtacag
caggtttctctagttatcaattatgaccttcccaataatcgtgagctttacattcatcga
attggtcgctctggacgttttggacgaaagggtgttgcaataaattttgtgaagagtgat
gacatcaagatcttgagagacattgaacaatactacagtactcagattgatgaaatgcca
atgaatgttgctgatcttatataa
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