Glycine max (soybean): 100801152
Help
Entry
100801152 CDS
T01710
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
gmx
Glycine max (soybean)
Pathway
gmx03013
Nucleocytoplasmic transport
gmx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100801152
03015 mRNA surveillance pathway
100801152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100801152
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100801152
mRNA cycle factors
P-body specific factors
100801152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
DUF6980
NiFe-hyd_HybE
RRM_2
Motif
Other DBs
NCBI-GeneID:
100801152
NCBI-ProteinID:
XP_014630501
LinkDB
All DBs
Position
4:complement(51133226..51142721)
Genome browser
AA seq
535 aa
AA seq
DB search
MKVRSEREKTKVVIRHLPPSLTQSDLFQHIDSHFASRYNWFSFRPGNNSHKRQRHSRAYI
DFKCPDDVFEFAEFFDGHVFVNERGAQHKVIVEYAPSQRVPKPSAKKDGREGTIFKDPDY
LEFLKLIAKPQEHLPSAEIQLERKESEQVGASKETPIVTPLMEYIRQKRAVDSGMQASSA
VAKVCRRSRAALPGKPGSGNIKRGSEKKKYVQKDNAKSATRKESKNMSAFIVVPRRDDQF
AESSIKGISDIKTLHGVEGSISGIPLTSESGKKKFLLLKGKQQDIPSATEATVKQQNVQS
GNSPISTPAKQNQRREASGRLIRSILLNNEARQSQSTTGTQHKIQILSSENGQRPSRRFG
SRSGLNNQVSNHDAAQINSEGDSRRALDEKFIKRDLHGLGSSAKTEKRTRNKDRPDRGVW
TPLRRSDVSHAGNDYSSSSLAQPTQSNPESAEGEVKENVPSGNRGGEFSASAGGHGGNPS
IENGSQRNFIHHGASYVVKDDGAVSSISKGKPSKKSVGHSAHEKQVWVHKSSSGS
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtccgttcggaaagggaaaagacgaaagttgtgattaggcatttgcccccttct
ctcactcaatccgatctcttccaacacatcgattctcacttcgcttctcgctacaattgg
ttctccttccgtcccggcaacaacagtcacaagcgtcagaggcattcccgagcgtatata
gacttcaagtgtcccgatgacgttttcgagttcgccgagttctttgatggacacgttttt
gttaacgagcgaggtgcccagcataaagtgatagttgagtatgcaccttctcagcgtgtt
ccaaagccaagtgccaaaaaagatggacgtgaagggactatattcaaagatccagattat
cttgagttcctcaaactaattgcaaaacctcaagagcatcttcctagtgcagagatacaa
ttggaaagaaaagaatctgagcaagttggggccagcaaggaaacacctattgtcacaccc
ctgatggaatatattcgtcagaaacgtgctgttgacagtggtatgcaggcttcatcagca
gtggcaaaagtttgcagaagatctagagctgctttgcctggtaagcctggctcaggcaat
attaaacgtggatctgaaaagaaaaagtatgttcagaaggacaatgccaagagtgctact
cgcaaagagtcaaaaaacatgtcagcctttattgtggtcccccggcgagacgatcaattt
gctgaatcaagtataaaaggaatttctgacattaaaactttgcatggcgttgaaggttcc
atttctggaattccactgacttctgagtcaggaaagaaaaaattccttcttcttaaaggg
aaacagcaggacattcccagtgccactgaggccacagtaaaacagcaaaacgtacaatct
ggaaattctcctatttcaactcctgcaaaacagaaccagagacgtgaagctagtggaaga
ttgattaggagcatacttctaaataatgaagctcgtcaaagtcagtctacaactggtaca
caacataaaattcaaattttaagttctgagaatgggcagcgaccctctcgtcgttttggt
tcaaggtctgggttaaataatcaagtctcaaatcatgatgctgcacaaattaattccgaa
ggggattctagaagagcattggacgaaaagttcataaaaagggatcttcatggtttgggg
agcagtgccaaaacagaaaaacgtactagaaacaaggatagacctgatcgaggtgtttgg
acaccccttcgtcgttctgatgtttcgcatgctggtaacgactattcatcatcctcattg
gcacagcctactcagtcaaatcctgaatctgctgaaggagaagtaaaagaaaatgttcct
tctggaaacaggggaggtgaattctctgcttctgcaggtggacacggtggcaatccttca
attgagaatggttctcaaagaaattttattcatcatggagcttcctatgtagtgaaggat
gatggtgcagtcagtagtataagcaaagggaaaccttccaagaaaagtgttgggcatagt
gctcacgagaagcaagtctgggtccataaatcttcttcagggtcataa
DBGET
integrated database retrieval system
