Glycine max (soybean): 100801159
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Entry
100801159 CDS
T01710
Symbol
HDA3
Name
(RefSeq) histone deacetylase 6 isoform X2
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03082
ATP-dependent chromatin remodeling
gmx03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100801159 (HDA3)
03083 Polycomb repressive complex
100801159 (HDA3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gmx03036
]
100801159 (HDA3)
Enzymes [BR:
gmx01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
100801159 (HDA3)
Chromosome and associated proteins [BR:
gmx03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
100801159 (HDA3)
HDAC complexes
Sin3A-HDAC complex
100801159 (HDA3)
BRAF-HDAC complex
100801159 (HDA3)
REST complex
100801159 (HDA3)
SHIP complex
100801159 (HDA3)
MiDAC complex
100801159 (HDA3)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
100801159 (HDA3)
Heterochromatin formation proteins
Other heterochromatin formation proteins
100801159 (HDA3)
Chromatin remodeling factors
NuRD complex
100801159 (HDA3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
100801159
NCBI-ProteinID:
XP_003523097
UniProt:
I1JXA8
LinkDB
All DBs
Position
4:complement(44552428..44557521)
Genome browser
AA seq
464 aa
AA seq
DB search
MARGERAETESGVSLPSVGTDAKKRRVTYFYEPCIGDYYYGQGHPMKPHRIRMAHNLIVH
YGLHRRMQVNRPFPAAEADIGRFHADDYVDFLSTVSPQILSENSHSHYRQLKRFNVGEDC
PVFDGLFDFCRASAGGSIGAAVRLNREDADVAINWAGGLHHAKKAEASGFCYVNDIVLGI
LELLKVHRRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGVGAGK
NYSLNVPLNDGLDDETFRGLFRPIIQKVMDVYQPDAVVLQCGADSLSGDRLGCFNLTVKG
HADCLRFLRSFNVPLMVLGGGGYTVRNVARCWCYETAVAVGVEPSPKLPYNEYYEYFGPD
YNLHVEPSTMENLNTPRDLEKIRNTLLEQLSRLPHAPSAPFQTTPSVIEVPEEEEEDMDV
RPKRRIWSGEDFDSDHDDDMASSKNSDLTAQTRSVADDMDEDKD
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atggcgagaggggagagagcggagacagagagtggcgtttcgttgccctcggtgggcacg
gacgcgaagaagcggagagtaacgtacttctacgagccgtgcatcggcgactactactac
gggcaagggcatccgatgaagcctcaccgcattcgcatggcccacaacctcatcgttcac
tacggcctccaccgccgcatgcaggtcaaccgccccttccccgcggcggaggccgacatc
ggccgcttccacgccgacgactacgtcgacttcctctccaccgtctcgccgcaaatcctc
tccgagaattcccactcccactaccgtcagctcaagcgcttcaacgtcggcgaggactgc
cccgtcttcgacggcctcttcgacttctgccgcgcctccgccggcggctccatcggcgcc
gccgtccgcctcaaccgcgaagacgccgacgtcgccatcaattgggccggcggcctgcac
cacgccaagaaggccgaggcctccgggttttgctatgttaacgacattgttctcggcatt
ctagaacttctcaaagttcataggcgtgtgctgtatattgatattgatgttcaccatgga
gatggcgttgaggaggcattttacactactgatagggtgatgacagtgtcatttcataag
tttggggattttttcccaggaactgggcacattaaagacattggggtgggtgctggaaag
aattattctctaaacgtcccactcaatgatggattggatgatgagactttccgtggtctg
tttcgccccatcattcaaaaagtcatggatgtttatcaaccggatgcagttgttcttcaa
tgtggagctgactcgttgtctggtgatcggttgggttgcttcaacttgactgtgaagggc
catgcagattgccttcgtttccttagatcattcaatgtccctctaatggtcttgggtggg
ggaggatatacggttcgcaatgttgctcgttgttggtgttatgagactgcagtggcagta
ggagtggagcctagtcctaagttgccttacaatgaatattatgaatattttggcccggac
tataatcttcatgttgagccatccacaatggaaaacctaaacacacccagggatctggaa
aaaattcggaatacattactggaacaactttccaggcttccccatgcacccagtgcacct
tttcaaacaacaccatcggtcatcgaagttccagaagaggaagaggaggacatggatgta
aggccaaaacgtcgtatatggagtggtgaagattttgattcggatcatgatgatgacatg
gctagttcaaagaactctgatttaactgcacaaacgaggtctgttgcagatgacatggac
gaagataaagattaa
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