Glycine max (soybean): 100801402
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Entry
100801402 CDS
T01710
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100801402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100801402
03036 Chromosome and associated proteins [BR:
gmx03036
]
100801402
Enzymes [BR:
gmx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100801402
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100801402
mRNA degradation factors
5'-3' decay
Decapping complex
100801402
Chromosome and associated proteins [BR:
gmx03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100801402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
TFIIA
Motif
Other DBs
NCBI-GeneID:
100801402
NCBI-ProteinID:
XP_003528863
UniProt:
I1KID2
LinkDB
All DBs
Position
7:6486807..6494112
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AA seq
500 aa
AA seq
DB search
MNHNNSNNRARYPPGMGLVRGGFNPNLSQNPNQNQNPSLNQNHHAFQARPPYHQQQQAQY
VQRHLLQQQQQQQQWLRRDANAVDEVEKTVQSEAVDSSSQDWKARLKIPPADTRYKTEDV
TATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAF
CIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMR
LYQPVHLLVGTPGRILDLAKKGVCILKDCAMLVMDEADKLLSPEFQPSIEQLIHFLPTTR
QILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSK
LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT
DLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ
ELGTEIKQIPPQIDQAIYCR
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgaatcacaacaacagcaacaatagagcgaggtaccctcccgggatgggacttgtgcgc
gggggtttcaatccgaacctgagccagaacccgaaccagaaccagaacccgagcctgaac
cagaatcatcacgcgttccaggctcggccgccgtaccaccaacagcaacaggcgcaatat
gtgcagaggcatttgttgcagcagcagcagcaacagcagcagtggctgagaagggatgcc
aacgccgtcgacgaggttgagaagaccgtgcagtctgaagccgtcgattcgagttcccaa
gattggaaagcaagactaaagattccaccagctgatactcgctacaagacagaggatgta
acggcaactaaaggaaatgagtttgaggattattttctgaagcgtgagctgctcatggga
atatatgagaagggttttgaaaggccttctcccatccaagaagaaagcattccaattgct
cttactggtagtgacattcttgctagggctaaaaatggaactggcaaaacagctgcattt
tgcattcctgcattggaaaaaattgatcaggacaataatgttattcaagttgttatactg
gtcccaacccgagaattggcattgcaaacttctcaagtatgcaaagaacttggaaagcac
ttgaaaattcaagttatggttacaacaggtggtaccagcttgaaagatgatataatgcgc
ttatatcaaccagttcatttactagttggaacaccaggaagaatattagatcttgccaag
aaaggtgtttgtattctgaaagattgcgctatgcttgttatggatgaggccgataagctt
ctgtccccagagtttcaaccatctatagagcagctgattcattttcttcctacaacccgt
caaatcttgatgttttcagccacatttcctgttactgtaaaggatttcaaagataggtat
cttcaaaagccttatgtcatcaatcttatggatgagctaactctgaagggtattacacaa
ttttatgcattcgtggaagagagacagaaagtccactgcctaaatactctattttccaag
ctgcaaataaaccagtctatcatcttctgcaattcagtgaatcgggttgaactccttgcc
aagaaaatcacagaacttgggtattcatgtttctacattcatgcaaagatgttgcaagac
catcgtaacagagtgtttcatgatttccgcaatggtgcatgtcgaaatcttgtttgtact
gatctttttactagaggaatagacattcaagcagttaacgttgttattaattttgatttt
cccaagaatgcagagacttatttgcacagggttggtcgttctgggaggtttgggcacctt
ggtttagcagtgaacttgattacctatgaggatcgctttaatctatataggattgaacaa
gaacttggaactgaaataaagcagattcccccacaaattgatcaggcaatttattgtcgg
tga
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