Glycine max (soybean): 100803008
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Entry
100803008 CDS
T01710
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
gmx
Glycine max (soybean)
Pathway
gmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100803008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gmx03019
]
100803008
Enzymes [BR:
gmx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100803008
Messenger RNA biogenesis [BR:
gmx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100803008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
100803008
NCBI-ProteinID:
XP_003532241
UniProt:
K7LAL5
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All DBs
Position
8:complement(45234368..45238707)
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AA seq
619 aa
AA seq
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MAWVFELRSRSLCTSSSSKWRVKQVTTSNFQESLQEIKTHISNSDFVAISMGKTGSPSAP
SWLRPLPFDTAQTAYSKARRAAQRFQLLHFAVCPFSVSRSDKLLAHPYNFMLFPRDEMKM
GMPTYSFSCQTSLLASMARQGFDFNACVYNGISYLSRAQESAARIRLGTALPSLRVMKSS
SPSTVADTVFVERIRSKVKYWRESCKSSDTNKSRDEELVNSLRNIVLGNEQFRSRPCMTV
DVCSERQVQLILEMVLDYSDDLLPLPIPTKSGTIHAVRIVLANSKEDKDLLERELRNLEE
EESKKIRGFREVIDLISASQKPVISHNCLNDCTLIHSKFIAPLPPEIDEFVSSLCSVFPE
VLDINYLMKKHGTMRKVTNIPSAISYLNNHFFAPVDLEIPDQATVKEGKIHGLTALRLSY
LFMKLCSILKISPNVTESGNKHLAPELEDFTNVFHPFSTPIQDSFNGGDVGMWTNNTKKV
SCEHLVFLWGFKIGITAGMLKSLLRSSHDIFSREFDVKLVDKSCAIVVFWQSGVSKRFLD
ILNSEEIRGDLKELVSDGMRVTSYETYNTICRLGLWEMDLAESLERALESSCCDIESNCE
RKSSEIHWYNDNVINLDDL
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggcttgggtgtttgagttgcggagtcgttccctctgcacgtcctcctcctcgaaatgg
agggtgaagcaggtgacaacctccaacttccaagagtccctgcaagagataaagacgcac
atctccaactccgactttgtcgccatttccatgggaaaaacgggctctccctccgcgccg
tcgtggctccgccctctacccttcgacaccgcccagactgcctactccaaggcccgccgc
gccgcccagagattccagctcctccacttcgccgtctgccccttctccgtctcccgctcc
gacaaactcctcgctcacccgtataatttcatgttgtttccaagagatgaaatgaagatg
gggatgcccacttacagcttttcgtgccagacttcgctacttgcctccatggctcgccag
gggtttgatttcaatgcttgcgtctacaatggcatatcatatctatccagagcacaagag
tcagcagctagaattcgtcttgggactgctctcccttctcttcgtgtgatgaaatcttct
tcaccctctactgttgctgatacagtgtttgttgagaggattagatcaaaggttaaatat
tggagagagtcatgtaaaagctccgacacaaacaaaagcagagatgaagaacttgtcaac
tcccttaggaatattgtcctgggcaatgaacagttcagatcaagaccttgcatgactgta
gatgtttgcagtgaacgtcaagtgcaacttattctggagatggtgttagactactcagat
gatcttcttcctttgccaatccctactaagagtgggaccattcatgcagtacgaattgtt
ttggcaaattctaaagaagataaggatttattggagagagagcttcgaaatcttgaagag
gaggaaagcaagaaaattcgtggattccgagaggtgatcgatttgatttctgcttcacag
aaacctgttatctcccacaattgccttaatgattgtacactaattcattcaaaattcatt
gctccacttccgcctgagatagatgaatttgtgagctccttgtgctcggttttccctgag
gtgcttgacataaattatttgatgaagaaacatggaaccatgagaaaagtgaccaacatt
ccgagtgctatatcctacttgaataatcatttttttgcaccagttgatttggaaattcct
gaccaagctacagtaaaagaaggcaagattcacggacttactgcattaaggctatcctat
ttatttatgaagctttgctctatattgaaaatttccccaaatgttactgaatctggcaac
aagcatttggcccccgagcttgaagacttcaccaatgtattccatccattctcaacccct
atccaagattcatttaatggtggggatgtcggcatgtggaccaataatacaaaaaaagtc
agttgtgagcatttggttttcttatggggattcaaaattggtatcacagctggcatgctg
aagagtttacttcgttcttcccatgatatcttttcacgagagtttgatgttaaattggtg
gacaagagttgtgccattgttgttttctggcaatctggggtatcaaaaagatttctagac
atattgaatagtgaagaaataagaggagacttaaaggagttagtgtcagatggcatgagg
gtaaccagttatgagacctacaacacaatatgtaggttaggtttgtgggagatggatctt
gcagaatcattagaaagagccttggaaagttcttgctgtgatattgagagtaattgtgag
agaaaatcttctgagattcattggtataatgacaatgtaattaacttggatgatctttaa
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