KEGG   Glycine max (soybean): 100803276
Entry
100803276         CDS       T01710                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
gmx  Glycine max (soybean)
Pathway
gmx03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gmx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100803276
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gmx03041]
    100803276
Spliceosome [BR:gmx03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    100803276
 Complex C
   U5 SnRNP specific factors
    100803276
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR75_1st NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_SPT8 Beta-prop_SCAP ANAPC4_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st WD40_RFWD3 eIF2A Beta-prop_HPS5 Beta-prop_WDR75_2nd Beta-prop_RIG_1st Beta-prop_DCAF12 Beta-prop_Nup120_160 Beta-prop_NWD2_C PEP5_VPS11_N Nbas_N WDR54 PALB2_WD40
Other DBs
NCBI-GeneID: 100803276
NCBI-ProteinID: XP_040868426
LinkDB
Position
19:37468103..37471312
AA seq 345 aa
MQVFPSEGESALSVVGPRPMEWSTVPYNAPQAPGPNGKQRTSSLESPIMLLSGHQSAIYT
MKFNPAGSVVASGSHDREIFLWNVHGDCKNFMVLKGHKNAVLDLHWTTDGTQIVSASPDK
TVRAWDVETGKQIKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFP
DKYQITAVGFSDASDKIFTGGIDNDVKIWDLRKGEVTMTLQGHQDMITAMQLSPDGSYLL
TNGMDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYI
WDTTSRRILYKLPGHNGSVNECVFHPNEPIIGSCSSDKQIYLGEI
NT seq 1038 nt   +upstreamnt  +downstreamnt
atgcaagtttttcccagtgaaggcgaaagtgctttgtcagttgttggtccaaggccaatg
gaatggtctactgttccatacaatgcccctcaagctcctgggccaaatggaaagcagcgg
acctcaagtttagaatcaccaatcatgttgctgtcaggtcaccagagtgctatatatacc
atgaagttcaatccagcaggatcagtcgttgcatctggatctcatgacagggaaattttc
ctctggaatgtgcatggggattgcaagaacttcatggttctgaaaggtcacaagaatgca
gttttagatcttcactggactacagacgggacacaaatagtctctgccagcccggacaaa
acagtgagggcatgggatgtggaaacaggaaaacaaatcaaaaagatggtagaacatctc
tcatatgttaattcatgttgtccttcccgaaggggaccacctcttgtggtgagtggctct
gatgacggaactgctaaattatgggatatgcgtcagaggggttccatccaaacattccca
gataaataccagattacggctgttggcttctctgatgcatcggataagatcttcactggt
ggtattgataatgatgtaaagatttgggatttgcgtaaaggtgaagttaccatgacacta
caaggtcatcaagatatgattactgctatgcaattgagtcctgatgggtcctaccttctt
acaaatggcatggattgcaagctttgcatttgggatatgcgtccgtatgctccacaaaat
cggtgtgtgaaggtgttggaagggcaccaacacaactttgaaaagaacttgttgaagtgt
ggttggtctcctgatggaagcaaggtaacagctggtagttctgatcgaatggtttacatc
tgggataccacttctcgccgcatcttgtataagcttcccggtcacaatggatctgttaat
gagtgtgtttttcatcccaatgagcctattattggatcttgcagcagtgacaagcagatt
tatcttggggagatatga

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