Glycine max (soybean): 100804340
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Entry
100804340 CDS
T01710
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
gmx
Glycine max (soybean)
Pathway
gmx04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gmx00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100804340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gmx04131
]
100804340
Membrane trafficking [BR:
gmx04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
100804340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
zf_RING_Vps8
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
WD40_Prp19
Beta-prop_HPS5
zf_RING_Vps8_fungal
zf-RING_2
Beta-prop_EML_2
WDR55
Beta-prop_WDR11_2nd
EIF3I
PEP5_VPS11_N
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-GeneID:
100804340
NCBI-ProteinID:
XP_003538149
UniProt:
K7LQ96
LinkDB
All DBs
Position
11:complement(16508360..16518893)
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AA seq
957 aa
AA seq
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MAPFPPENGVEGDDEREEEDEEEEEDDEEEVEDEEDEEEPRLKYQRMGGSIPSLLASDAA
SCIAVAERMIALGTHGGTVHILDFLGNQVKEFSAHASVVNDLSFDTEGEYIGSCSDDGSV
VINSLFTDEKLKFEYHRPMKAVALDPDYARKMSRRFAGGGLAGHLYLNSKKWLGYRDQVL
HSGEGSIHAVKWRASLVAWANDAGVKVYDTANDQRITFIEKPRGSPRPELLLPHLVWQDD
TLLVIGWGTSVKIASIRTNHQKAANGSFRQVPLSGMTQVDIVASFQTSYFISGLAPFGDA
LVVLAYIPGEEDGDKDFSSTAPSRQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYRAKD
YSLAHAPFSGSSYAGGQWAAGDEPLYYIVSLKDVVIAKPRDTEDHISWLLQHGWHEKALA
VVESGQGRSELLDEVGSRYLDHLIVERKYSEAASLCPKLLRGSASAWERWVFHFAHLRQL
PVLVPYMPTENPRLRDTAYEVALVALATNPSFHKDLLSTVKSWPSVIYSALPVISAIEPQ
LNTSSMTESLKEALAELYVIDEQYEKAFLLYADLMKPEVFDFIDKHNLHDAIRGKVVQLM
RLDCKRAVPLLIQNRDLISPPEVVKQLLNADDKSDCRYFLHLYLHSLFEVNPHAGKDFHD
MQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLLREQVFILGRMGNSKQALAVII
NKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGL
EIPRLRDRLVKIITDYRTETSLRNGCNDILKADCVNLLIKYYKEARHGISLGNEEDEPRV
KMSDTRASQVFDKSPSLRTVEVKSKTRGGGRCCICFDPFSIQTVSVIVFFCCHGYHTTCL
MDSSYTSSNKKEVQATTLEAETYDDYNGYDDDASDDDEEAKSGGPRMRCILCTTAAS
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgtttccgccagagaacggcgtcgaaggagacgatgagagagaagaggaagac
gaagaagaagaagaagacgacgaagaagaagttgaagatgaagaagatgaagaggaaccg
aggctcaagtaccagagaatgggaggaagcatcccttcgctgcttgcgagtgacgccgcg
tcgtgcatcgccgtcgcggagcggatgatcgctctcggcactcacggcggcaccgttcac
atcctcgattttctcgggaatcaggttaaggaattctctgcacatgcttctgttgtcaat
gaccttagctttgacacagaaggtgaatatattggaagttgttccgatgatggatcagtt
gttataaacagccttttcactgatgagaaattgaagtttgagtaccatcggccgatgaag
gcagtggcgttggatccagattatgcaaggaaaatgtctaggagatttgctggtggtggt
ttggctggtcatttatatttaaattcaaagaaatggttgggctaccgagatcaggttttg
cactctggtgaaggttcaatacatgctgtgaaatggagagcaagtcttgttgcttgggct
aatgatgcaggagtgaaggtttatgatactgccaatgaccagcgtattacatttattgaa
aaaccacgagggagcccacgccctgagcttttgcttcctcacctggtttggcaggatgac
accctcttggttattggctggggaacatctgtcaaaattgcttcaattaggacaaatcac
caaaaagcagccaatgggtcattcaggcaagttcctttgtctggtatgacccaggtggat
atcgtggcatcttttcaaaccagctatttcatctcaggacttgctccctttggtgatgct
ttggttgttctagcatatattcctggagaagaagatggagataaggattttagtagcact
gctccttcacggcagggcaatgcacagagaccagaagtaagaatagtaacatggaataat
gatgagctttctacagatgctctgccagtacatgggttcgagcattacagggcaaaggac
tattctcttgctcatgctcccttctcaggtagcagttatgctgggggtcagtgggctgca
ggtgatgaaccactttactatattgtatctctgaaggatgtagttattgccaaaccaagg
gatactgaagatcatatttcatggcttcttcagcatgggtggcatgaaaaagctttggct
gtggttgaatctggtcagggacggagtgaactacttgatgaggtgggatctaggtacctt
gatcatctgattgtggaaagaaaatacagtgaagcagcatctttgtgtcccaagttgctt
cgaggatcagcttcagcatgggagagatgggttttccactttgcacatcttcgtcaactc
cctgttttagttccttacatgcctactgaaaaccccagactacgtgatactgcttacgag
gttgctctcgttgcattggctacaaatccttcttttcataaggatctcttgtccactgta
aaatcctggccatctgtaatttattctgcattacctgtaatttcagccattgaacctcag
ctaaatacttcatccatgactgaatcacttaaggaggcattagcagagttgtatgtaatc
gatgagcaatatgagaaagccttcttgttgtatgctgatcttatgaagccagaagtattt
gattttattgataaacataacctacacgatgcaattcgtggaaaggttgtccaactaatg
aggctagactgcaagcgtgcagttcctttgttaatccagaatagggacttaataagtcca
cctgaagttgtgaagcaacttctaaatgcggatgataagagtgattgtagatatttttta
catttatatctccactcattatttgaagtaaatcctcatgctgggaaagacttccatgat
atgcaggtagaactctatgcagactatgatcctaagatgctgctaccttttctccgtagc
agtcaacactacacccttgagaaggcttacgaaatttgcattaaaagagacctattgagg
gagcaagtcttcatcctaggaaggatgggaaactcgaaacaagccctagctgttattatt
aacaaattgggggatatagaggaggccgtagagtttgtcaccatgcagcatgatgatgaa
ctttgggaagaattaatcaagcaatgccttcacaaacctgaaatggtgggcatattattg
gagcacacagttggaaatcttgatcccctttatattgtaaataaggttcctaatgggttg
gaaatacctcgactccgggatcggctggttaagattatcactgactacaggactgaaaca
tcactcagaaatgggtgcaatgatatccttaaggcggactgtgtcaatcttttaattaag
tattacaaagaggcaaggcatggaatttctttaggtaatgaagaagatgagccgcgggtt
aaaatgagtgatactcgtgcttctcaggtatttgacaaatctccaagtctgagaactgtg
gaggtgaagtcaaagactaggggaggtggaagatgttgtatatgttttgatccgttttct
atacagactgtctcggtcattgttttcttttgctgtcatggttatcacacaacttgtctc
atggattcatcttacactagtagtaacaagaaagaggtccaagccacgaccctagaggca
gaaacgtatgatgattacaatggttatgacgatgatgctagtgatgacgatgaagaagcc
aaatcgggtggtcctcgtatgcgttgtatattgtgtactactgctgctagttga
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